Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.4e-158 561.6 286 100.0
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.5e-157 557.4 286 99.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 5.2e-106 388.3 324 65.1
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.0e-101 372.5 318 63.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 5.8e-97 358.2 360 57.2
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.7e-94 349.4 361 56.5
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.2e-89 334.0 328 58.5
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.3e-85 319.7 333 59.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.4e-82 310.5 328 57.3
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 5.3e-82 308.5 318 54.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 6.9e-82 308.1 329 53.8
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.0e-81 306.6 344 51.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 9.3e-79 297.7 343 49.9
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.3e-77 293.9 366 48.1
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 3.0e-77 292.7 341 50.4
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 7.4e-76 288.1 329 51.1
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 7.4e-76 288.1 364 48.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.6e-75 287.0 355 48.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 3.6e-75 285.8 379 47.0
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.8e-74 283.5 373 46.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.4e-74 283.1 316 50.3
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.4e-74 283.1 351 48.4
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 3.1e-74 282.7 363 47.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 5.3e-74 282.0 349 47.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 6.9e-74 281.6 316 50.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.0e-74 281.2 316 50.0
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 2.0e-73 280.0 337 48.7
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.6e-73 279.6 362 46.1
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.4e-73 279.3 351 47.9
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.8e-72 275.8 352 47.7
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 6.4e-72 275.0 322 47.2
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.4e-71 273.9 308 52.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.4e-71 273.9 363 46.3
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.9e-71 273.5 316 49.1
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.2e-71 272.7 364 46.2
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 9.3e-71 271.2 308 51.9
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.5e-70 269.2 377 44.3
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.0e-70 268.5 363 46.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 6.0e-70 268.5 363 46.6
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.9e-68 263.5 350 44.3
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 5.6e-68 261.9 341 49.0
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.8e-67 258.8 295 49.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.1e-66 256.1 363 44.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.1e-66 256.1 347 45.2
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.5e-65 253.8 356 43.0
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.5e-65 253.8 340 45.6
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 3.4e-65 252.7 290 50.3
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.2e-64 250.0 363 44.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.4e-63 247.3 297 49.5
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 7.1e-63 245.0 321 46.1
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 7.1e-63 245.0 264 51.9
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 7.1e-63 245.0 264 51.9
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.6e-62 243.8 304 49.3
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.6e-62 243.8 398 42.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.3e-60 236.1 310 47.7
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.3e-60 235.7 335 44.2
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 4.8e-59 232.3 327 45.0
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.3e-59 231.9 296 47.0
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 6.3e-59 231.9 336 42.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.4e-58 230.7 334 42.8
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.4e-58 229.9 336 42.3
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.1e-58 229.6 335 42.4
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.2e-57 227.6 321 45.5
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 5.9e-57 225.3 326 42.9
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.7e-56 223.8 315 46.3
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 8.5e-56 221.5 371 40.4
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.1e-55 221.1 402 39.1
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.9e-55 220.3 324 42.6
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.2e-55 219.5 340 43.5
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.1e-54 216.9 305 44.3
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.8e-53 213.8 390 39.7
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 8.7e-53 211.5 363 38.3
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.5e-52 209.9 293 43.0
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 7.4e-52 208.4 319 42.0
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.2e-51 206.8 291 43.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 4.8e-51 205.7 334 41.9
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.8e-51 205.7 298 44.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 4.8e-51 205.7 395 36.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.8e-50 203.8 328 43.0
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.4e-50 203.4 336 41.7
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.1e-50 203.0 325 40.6
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 5.3e-50 202.2 295 42.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.2e-49 201.1 289 43.3
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.0e-49 200.3 295 41.7
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.4e-49 199.5 302 41.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 3.4e-49 199.5 282 44.3
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.4e-49 199.5 328 40.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.9e-49 198.7 333 36.6
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 7.7e-49 198.4 305 43.6
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.7e-48 197.2 297 43.4
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.2e-46 191.0 295 42.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.7e-46 189.9 297 41.8
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 4.6e-46 189.1 294 43.5
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 5.1e-45 185.7 291 41.9
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.7e-45 185.3 362 35.9
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.8e-45 184.9 351 33.9
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.0e-44 183.7 132 65.9
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 5.7e-44 182.2 283 42.0
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 9.7e-44 181.4 320 38.8
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.8e-43 179.9 343 38.5
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 3.7e-43 179.5 283 41.3
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 3.7e-43 179.5 283 41.3
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 4.8e-43 179.1 283 41.3
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.4e-42 176.8 294 40.5
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.1e-42 176.4 290 41.4
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.4e-41 172.9 292 40.8
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 7.7e-41 171.8 280 42.5
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.0e-40 171.4 278 42.4
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.2e-40 170.2 278 42.4
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.9e-40 169.9 285 40.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.5e-39 166.8 282 41.5
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.5e-39 165.6 304 38.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 9.4e-39 164.9 190 49.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.0e-37 161.4 434 32.3
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.5e-36 157.5 315 37.8
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-34 151.4 138 56.5
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.1e-34 149.4 306 38.6
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 3.5e-33 146.4 124 61.3
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.5e-33 146.0 343 36.2
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-32 144.4 323 35.6
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.2e-32 143.7 137 52.6
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.1e-31 141.4 304 36.2
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.5e-31 141.0 108 59.3
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.9e-31 140.6 283 37.8
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.2e-31 139.4 154 46.8
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.2e-31 138.7 344 34.0
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 7.2e-31 138.7 339 32.7
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 6.1e-30 135.6 435 29.2
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.8e-29 134.0 107 62.6
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.0e-29 133.3 109 59.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-28 131.0 155 51.0
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-28 131.0 155 51.0
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.5e-28 131.0 294 34.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 3.3e-28 129.8 319 35.4
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 3.3e-28 129.8 147 52.4
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 3.3e-28 129.8 319 35.4
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.8e-27 126.7 290 34.5
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-27 126.3 298 36.9
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.8e-27 125.9 140 47.1
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.4e-26 124.4 107 59.8
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.4e-26 123.6 298 33.9
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.4e-26 123.6 298 33.9
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.4e-26 123.6 298 33.9
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.1e-26 123.2 104 58.7
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 3.1e-26 123.2 104 58.7
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 4.1e-26 122.9 280 30.4
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.7e-25 120.2 112 53.6
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 4.5e-25 119.4 134 50.0
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 7.7e-25 118.6 122 52.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.8e-24 116.3 73 79.5
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.0e-24 115.9 283 33.6
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.5e-24 115.2 147 40.1
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.1e-23 114.8 287 33.4
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.9e-23 114.0 159 44.7
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 5.2e-21 105.9 244 33.2
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.2e-20 104.8 114 49.1
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.4e-20 103.2 73 68.5
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 5.7e-20 102.4 290 27.9
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 9.8e-20 101.7 112 50.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.8e-19 100.1 338 29.6
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.8e-19 100.1 118 47.5
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 8.3e-19 98.6 291 27.5
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.4e-18 97.8 144 42.4
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.1e-18 96.3 286 28.7
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 5.4e-18 95.9 331 29.6
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.7e-17 92.0 251 32.3
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 2.1e-14 84.0 101 44.6
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.0e-13 81.6 98 45.9
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 2.3e-13 80.5 98 43.9
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 8.8e-13 78.6 83 42.2
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.2e-11 73.9 43 81.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 5.0e-08 62.8 94 35.1
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 8.6e-08 62.0 257 24.5
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.3e-07 58.9 95 33.7
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 6.1e-06 55.8 111 31.5


User provided reference genes

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