Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.2e-141 506.5 264 100.0
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.6e-138 496.1 264 98.1
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 3.1e-105 385.6 264 78.0
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 4.2e-102 375.2 264 75.8
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 2.4e-97 359.4 253 75.1
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 4.4e-91 338.6 257 68.5
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 3.7e-90 335.5 270 67.4
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 4.1e-89 332.0 255 68.2
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 9.1e-89 330.9 255 67.8
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 2.5e-86 322.8 262 64.5
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 4.2e-86 322.0 264 63.3
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 5.5e-86 321.6 392 50.8
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 2.7e-85 319.3 409 48.7
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 3.6e-85 318.9 262 63.7
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 4.0e-84 315.5 254 65.4
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 6.8e-84 314.7 256 62.9
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 2.6e-83 312.8 262 58.8
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 4.9e-82 308.5 255 63.9
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 8.3e-82 307.8 255 65.1
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 2.4e-81 306.2 255 63.5
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 4.5e-80 302.0 264 57.2
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 5.0e-79 298.5 264 56.8
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 6.6e-79 298.1 249 61.4
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.5e-78 297.0 251 60.6
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 9.5e-78 294.3 258 59.3
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 9.5e-78 294.3 262 61.1
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 9.5e-78 294.3 257 60.3
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 2.1e-77 293.1 261 56.3
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 3.6e-77 292.4 258 58.5
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.3e-76 289.7 264 55.7
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 5.2e-76 288.5 257 58.4
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 6.8e-76 288.1 262 56.5
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 1.5e-75 287.0 251 59.4
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 2.6e-75 286.2 254 57.9
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 1.3e-74 283.9 264 55.3
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.3e-74 283.9 259 57.5
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 6.4e-74 281.6 257 57.2
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 7.0e-73 278.1 264 58.0
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 2.0e-72 276.6 255 56.5
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 2.7e-72 276.2 222 62.2
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 3.0e-71 272.7 258 55.8
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 3.0e-71 272.7 258 55.8
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 5.0e-71 271.9 251 56.2
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 1.9e-70 270.0 251 55.8
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 9.5e-70 267.7 261 56.7
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 1.8e-68 263.5 255 54.9
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 3.4e-67 259.2 249 51.4
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 5.8e-67 258.5 260 55.0
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 9.8e-67 257.7 260 55.8
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 6.4e-66 255.0 258 51.9
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 1.1e-65 254.2 264 49.6
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 1.1e-65 254.2 258 51.9
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.9e-65 253.4 264 49.6
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 2.4e-65 253.1 228 57.5
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 9.2e-65 251.1 258 51.6
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 1.6e-64 250.4 358 42.2
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 2.0e-64 250.0 264 50.0
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 3.5e-64 249.2 264 48.5
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 6.0e-64 248.4 260 50.0
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 6.0e-64 248.4 254 51.2
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 1.3e-63 247.3 265 50.2
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 1.7e-63 246.9 256 51.6
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 3.9e-63 245.7 262 47.3
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 5.0e-63 245.4 264 48.1
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 6.6e-63 245.0 262 48.1
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 6.6e-63 245.0 262 48.1
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 3.3e-62 242.7 263 46.8
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 4.3e-62 242.3 251 53.8
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 4.3e-62 242.3 251 53.8
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 2.1e-61 240.0 249 51.8
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 6.2e-61 238.4 255 49.0
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.1e-60 237.7 262 46.2
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 5.2e-60 235.3 255 50.6
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 2.0e-59 233.4 253 48.6
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.0e-59 233.4 245 53.9
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 7.5e-59 231.5 264 47.3
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 2.9e-58 229.6 246 49.6
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 1.1e-57 227.6 221 54.8
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 2.4e-57 226.5 221 52.5
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 2.4e-57 226.5 262 46.9
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 5.4e-57 225.3 259 47.1
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 9.2e-57 224.6 220 52.3
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 9.5e-54 214.5 261 46.7
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 1.1e-52 211.1 170 62.4
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 1.4e-52 210.7 261 46.0
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 6.8e-52 208.4 394 37.8
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 8.9e-52 208.0 260 43.1
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 3.0e-47 193.0 254 43.7
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 2.5e-46 189.9 204 49.0
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 2.4e-44 183.3 222 48.2
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 2.6e-43 179.9 222 46.8
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 3.4e-43 179.5 243 42.4
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 9.9e-43 177.9 253 39.9
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 8.4e-42 174.9 138 67.4
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 8.4e-42 174.9 249 41.0
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 1.7e-34 150.6 150 52.0
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 1.1e-33 147.9 222 45.0
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.5e-32 142.9 118 58.5
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 5.6e-30 135.6 145 51.7
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 1.6e-29 134.0 145 51.0
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 6.2e-29 132.1 145 50.3
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 8.1e-29 131.7 145 50.3
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 6.9e-28 128.6 109 65.1
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 2.3e-23 113.6 254 31.1
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 1.1e-22 111.3 85 72.9
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 1.3e-21 107.8 107 55.1
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 4.8e-21 105.9 120 51.7
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.2e-19 101.3 99 55.6
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.0e-15 88.2 83 56.6
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 1.8e-15 87.4 99 47.5
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.8e-15 87.4 74 59.5
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 7.4e-14 82.0 257 25.7
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.3e-13 81.3 94 45.7
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.3e-13 79.0 123 39.0
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.3e-13 79.0 123 39.0
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 7.6e-11 72.0 69 50.7
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.0e-07 61.6 99 40.4


User provided reference genes

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