Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1452.6 848 100.0
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1443.3 848 99.3
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1258.4 769 88.4
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1199.1 848 76.4
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1180.6 762 82.8
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1167.9 847 75.0
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1165.6 862 77.0
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1165.2 846 75.5
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1165.2 862 77.0
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1163.3 847 74.7
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1158.3 757 79.1
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1157.9 757 79.7
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1156.7 842 76.8
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1156.0 846 75.9
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1152.1 845 74.6
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1150.2 845 74.1
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1149.4 845 74.6
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 843 73.9
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1141.3 846 78.1
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1141.3 852 75.6
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1140.2 758 79.0
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 757 80.4
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 843 72.4
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1139.0 843 72.8
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1138.3 765 77.4
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1138.3 848 74.9
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1136.7 848 70.8
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1136.7 843 73.3
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 757 78.7
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 757 80.1
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1132.5 846 75.5
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1132.1 759 79.8
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1130.2 761 78.7
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1130.2 757 78.3
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1129.8 846 74.2
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1129.0 753 76.8
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1128.6 756 76.9
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1128.2 766 78.7
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1127.5 759 79.7
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1127.1 763 76.5
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1125.9 763 76.0
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1124.4 850 72.0
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 766 77.8
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1121.7 859 73.2
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1120.9 832 72.8
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1120.9 832 72.8
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1120.1 842 77.0
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1117.1 756 77.5
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1116.3 758 79.3
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1115.9 832 72.7
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1113.2 844 74.6
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1113.2 832 72.5
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1110.5 832 72.4
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1106.3 831 73.2
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 763 75.5
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1104.0 843 76.6
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1102.4 857 73.7
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1100.5 758 75.9
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1099.3 756 76.1
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 842 75.8
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 846 76.1
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1097.4 847 72.6
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1095.1 844 71.0
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 842 72.0
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1091.3 757 76.1
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1086.6 842 71.9
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1085.9 897 68.9
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1083.9 847 71.2
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1081.2 867 67.5
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1077.8 755 75.9
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1077.4 834 70.7
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 8.7e-311 1070.1 794 74.2
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 1.7e-309 1065.8 764 72.8
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 2.4e-308 1062.0 757 76.1
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 2.5e-305 1052.0 944 68.5
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 9.5e-305 1050.0 760 73.2
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.2e-304 1049.7 760 73.0
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 2.9e-301 1038.5 759 71.8
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 9.2e-300 1033.5 760 72.0
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 1.7e-298 1029.2 755 71.0
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 5.0e-298 1027.7 914 64.4
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 6.6e-298 1027.3 832 69.0
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 1.5e-297 1026.2 756 72.0
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 3.3e-297 1025.0 757 71.9
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 4.3e-297 1024.6 756 71.8
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 5.6e-297 1024.2 759 70.0
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 5.6e-297 1024.2 759 71.1
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 5.6e-297 1024.2 732 77.3
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 1.6e-296 1022.7 759 71.1
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 2.1e-296 1022.3 759 70.0
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.1e-296 1022.3 651 80.2
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 2.1e-296 1022.3 858 65.9
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 3.6e-296 1021.5 759 71.0
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 1.8e-295 1019.2 756 71.2
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 2.6e-294 1015.4 756 70.2
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 9.8e-294 1013.4 651 79.6
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 2.4e-292 1008.8 736 71.9
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.4e-292 1008.8 669 76.2
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 2.3e-287 992.3 642 80.4
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 1.6e-283 979.5 757 70.4
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 3.0e-282 975.3 670 73.3
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.4e-279 966.5 764 65.8
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 3.2e-276 955.3 756 64.7
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 4.3e-273 944.9 758 65.2
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 4.7e-272 941.4 568 83.5
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 6.8e-271 937.6 755 68.5
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 3.8e-269 931.8 625 75.0
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.9e-260 902.9 755 60.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 9.3e-252 874.0 759 58.9
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.5e-246 856.7 759 57.0
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.6e-240 836.6 861 58.8
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 1.1e-239 833.9 759 57.0
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.2e-238 830.5 755 65.3
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 9.7e-225 784.3 765 53.6
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 4.2e-204 715.7 426 85.2
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 3.1e-170 603.2 476 69.5
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 9.8e-169 598.2 445 73.3
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 9.0e-138 495.4 322 79.5
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 1.4e-127 461.5 739 36.8
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 3.3e-124 450.3 308 74.0
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.9e-120 437.2 269 81.4
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-119 434.1 389 74.8
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.7e-118 430.6 762 36.1
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.1e-116 425.2 403 58.8
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.6e-97 361.7 383 64.8
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 9.4e-95 352.4 836 31.2
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 5.2e-93 346.7 248 77.0
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.3e-56 225.7 227 57.3
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 3.6e-54 217.6 182 65.9
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 3.7e-51 207.6 125 84.0
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.3e-48 198.4 142 78.9
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 5.1e-48 197.2 131 71.0
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.1e-41 175.3 160 63.8
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.6e-41 174.1 157 62.4
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-40 172.9 157 61.8
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 9.3e-34 149.8 124 67.7
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 1.0e-16 93.2 70 67.1
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 8.7e-16 90.1 77 63.6


User provided reference genes

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