Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 6.3e-154 547.7 351 100.0
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.6e-147 525.8 353 96.9
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.7e-128 462.6 349 89.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.5e-70 270.8 360 57.2
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 1.9e-70 270.4 360 55.0
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 4.1e-68 262.7 367 58.0
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 5.3e-68 262.3 365 57.0
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 6.1e-64 248.8 369 55.6
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.8e-61 239.2 359 60.2
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.8e-60 237.3 359 51.8
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 1.1e-52 211.5 277 53.8
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.0e-47 194.9 283 51.9
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 4.0e-47 193.0 280 50.7
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 7.4e-46 188.7 280 50.4
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.0e-42 178.3 272 49.6
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 2.9e-42 176.8 286 50.3
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 2.5e-41 173.7 286 45.8
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 7.2e-41 172.2 286 49.7
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 1.2e-40 171.4 359 41.2
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 1.2e-40 171.4 287 48.1
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 2.7e-40 170.2 276 50.7
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 2.7e-40 170.2 356 52.2
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 2.7e-40 170.2 367 45.8
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.0e-39 168.3 280 51.8
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 1.8e-39 167.5 359 52.9
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 5.2e-39 166.0 364 42.3
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 1.2e-38 164.9 370 48.1
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 5.7e-38 162.5 276 48.2
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 4.8e-37 159.5 281 49.5
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 3.1e-36 156.8 225 56.4
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 4.1e-36 156.4 279 45.2
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 5.4e-36 156.0 279 47.3
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 5.4e-36 156.0 264 49.2
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 2.7e-35 153.7 282 40.8
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 3.5e-35 153.3 278 48.6
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 3.5e-35 153.3 277 45.8
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 2.2e-34 150.6 388 36.6
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 6.5e-34 149.1 264 44.3
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 8.5e-34 148.7 323 39.3
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 8.5e-34 148.7 198 56.6
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 8.5e-34 148.7 282 47.2
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.1e-33 148.3 395 34.7
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 1.1e-33 148.3 270 43.7
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 2.5e-33 147.1 296 41.9
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 9.4e-33 145.2 365 43.0
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.2e-32 144.8 287 41.1
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.1e-32 144.1 275 45.1
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.7e-32 142.9 239 51.0
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.0e-31 140.2 417 39.3
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 5.2e-31 139.4 196 56.1
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 6.8e-31 139.0 392 37.8
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 2.0e-30 137.5 388 42.0
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 5.7e-30 136.0 295 42.4
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.7e-29 134.4 286 37.8
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 2.8e-29 133.7 394 36.8
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.1e-28 130.2 292 40.8
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 4.1e-28 129.8 195 55.4
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 5.4e-28 129.4 240 45.8
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.0e-27 127.5 275 44.4
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 3.5e-27 126.7 369 34.7
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 3.5e-27 126.7 294 36.1
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 5.9e-27 125.9 246 44.3
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.7e-27 125.6 289 36.0
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 7.7e-27 125.6 285 42.5
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.3e-26 124.8 280 35.4
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.7e-26 124.4 307 41.4
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.3e-26 124.0 383 39.7
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.3e-26 124.0 387 35.1
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 8.6e-26 122.1 289 35.6
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.1e-25 121.7 394 37.8
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.9e-25 120.9 257 36.6
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 2.5e-25 120.6 377 37.7
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 2.5e-25 120.6 270 43.3
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.6e-25 119.4 304 39.1
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 9.5e-25 118.6 279 41.9
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.6e-24 117.9 238 43.7
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.8e-24 117.1 275 40.0
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.8e-23 114.4 394 38.3
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 3.0e-23 113.6 278 41.0
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 4.0e-23 113.2 301 32.6
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 6.8e-23 112.5 210 46.2
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 2.0e-22 110.9 281 35.9
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.4e-22 109.8 282 37.6
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.3e-21 108.2 294 38.1
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 4.9e-21 106.3 200 41.0
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.1e-20 105.1 71 74.6
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 1.8e-20 104.4 277 40.1
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 2.7e-19 100.5 262 41.2
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 3.5e-19 100.1 323 32.8
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.0e-18 98.6 234 41.5
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 2.9e-18 97.1 323 33.7
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 8.6e-18 95.5 291 35.1
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 4.3e-17 93.2 321 30.5
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 7.3e-17 92.4 299 34.8
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 2.8e-16 90.5 277 34.3
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.0e-15 88.6 172 49.4
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 1.0e-15 88.6 265 47.2
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.3e-15 87.4 296 30.4
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 5.8e-14 82.8 63 58.7
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 7.5e-14 82.4 289 33.6
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 7.5e-14 82.4 328 31.4
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 1.7e-13 81.3 301 30.2
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 2.2e-13 80.9 313 31.9
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.9e-13 80.5 297 31.3
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 4.9e-13 79.7 315 34.3
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 5.4e-12 76.3 287 33.8
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 7.0e-12 75.9 342 30.1
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 7.0e-12 75.9 287 33.8
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 7.0e-12 75.9 306 30.7
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 6.6e-10 69.3 274 29.6
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 3.3e-09 67.0 299 32.4
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 2.1e-08 64.3 56 51.8
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 8.1e-08 62.4 288 30.9


User provided reference genes

Program Settings