Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 3.5e-106 388.3 194 100.0
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 1.2e-82 310.1 195 82.1
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 6.1e-82 307.8 202 80.7
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 7.4e-80 300.8 193 78.8
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 6.3e-79 297.7 195 76.4
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 5.9e-77 291.2 178 81.5
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 1.1e-75 287.0 199 76.9
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 4.7e-74 281.6 185 76.2
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 4.7e-74 281.6 185 75.7
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 1.0e-73 280.4 185 75.7
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 1.4e-73 280.0 188 75.5
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 3.0e-73 278.9 188 72.9
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 8.8e-73 277.3 183 77.0
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 1.1e-72 276.9 188 71.8
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.1e-72 276.9 192 75.0
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.5e-72 276.6 190 72.6
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 2.0e-72 276.2 190 72.6
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 3.3e-72 275.4 186 73.7
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 3.7e-71 271.9 169 77.5
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 8.2e-71 270.8 193 72.0
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 3.1e-70 268.9 184 71.2
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 1.2e-69 266.9 186 74.2
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 2.7e-69 265.8 196 67.9
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 3.5e-69 265.4 181 71.8
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 7.7e-69 264.2 182 72.5
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 1.7e-68 263.1 185 70.8
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 2.2e-68 262.7 176 72.7
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 5.0e-68 261.5 184 69.0
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 8.5e-68 260.8 186 70.4
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 1.5e-67 260.0 181 72.9
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 1.6e-66 256.5 183 71.6
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 3.6e-66 255.4 185 69.2
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 4.7e-66 255.0 185 69.7
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 6.1e-66 254.6 185 68.6
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 6.1e-66 254.6 194 67.5
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 1.4e-65 253.4 186 69.9
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.4e-65 253.4 185 68.1
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 1.4e-65 253.4 183 69.4
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 1.8e-65 253.1 148 81.8
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 3.0e-65 252.3 165 71.5
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 5.2e-65 251.5 186 67.2
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 6.8e-65 251.1 194 66.0
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 8.8e-65 250.8 185 67.6
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 1.5e-64 250.0 192 68.2
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 3.4e-64 248.8 184 66.8
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 5.7e-64 248.1 185 69.2
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 7.5e-64 247.7 192 70.8
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 7.5e-64 247.7 181 70.2
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 7.5e-64 247.7 186 66.1
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 9.8e-64 247.3 197 68.0
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 2.2e-63 246.1 184 69.0
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 2.8e-63 245.7 181 69.1
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 4.8e-63 245.0 195 67.7
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 7.0e-62 241.1 189 63.0
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.2e-61 240.4 194 64.9
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 1.2e-61 240.4 194 64.9
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 2.0e-61 239.6 186 68.8
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 2.7e-61 239.2 188 63.3
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 2.7e-61 239.2 194 64.4
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 3.5e-61 238.8 175 70.3
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 3.2e-59 232.3 162 67.3
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 5.5e-59 231.5 188 64.4
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 7.2e-59 231.1 175 66.9
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 9.4e-59 230.7 176 66.5
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.2e-58 230.3 183 62.8
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 2.7e-58 229.2 175 64.6
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 6.1e-58 228.0 177 67.8
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 8.0e-58 227.6 170 69.4
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 4.0e-57 225.3 165 63.6
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 5.2e-57 224.9 178 65.7
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 1.2e-56 223.8 187 61.0
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 1.2e-56 223.8 187 61.0
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 1.2e-56 223.8 187 61.0
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 1.2e-56 223.8 170 67.6
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 4.4e-56 221.9 189 60.8
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 5.7e-56 221.5 174 64.4
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 5.7e-56 221.5 191 61.3
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 7.5e-56 221.1 290 47.2
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 4.9e-55 218.4 184 60.9
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 8.3e-55 217.6 182 63.2
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 2.4e-54 216.1 173 65.3
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 3.1e-54 215.7 177 64.4
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 3.1e-54 215.7 185 61.1
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 4.1e-54 215.3 187 61.0
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 5.4e-54 214.9 166 64.5
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 5.4e-54 214.9 176 60.8
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 9.2e-54 214.2 170 64.1
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 1.0e-52 210.7 168 61.9
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 1.1e-51 207.2 173 61.3
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.9e-51 206.5 159 62.3
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.9e-51 206.5 159 62.3
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 2.1e-50 203.0 141 66.7
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 4.7e-50 201.8 203 55.2
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 8.0e-50 201.1 201 56.2
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 6.4e-47 191.4 155 58.7
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 3.0e-44 182.6 128 76.6
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 1.5e-43 180.3 127 70.9
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 1.0e-41 174.1 181 48.1
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 1.1e-38 164.1 113 74.3
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 7.0e-38 161.4 140 55.0
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.7e-36 156.8 115 60.9
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 5.0e-36 155.2 171 46.8
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 1.5e-35 153.7 117 62.4
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 2.5e-35 152.9 92 78.3
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.5e-32 143.7 113 61.9
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.5e-32 143.7 93 69.9
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 4.7e-26 122.1 131 47.3
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 4.9e-23 112.1 114 48.2
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 8.6e-20 101.3 69 66.7
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 1.8e-17 93.6 126 40.5
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 3.4e-16 89.4 137 41.6
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 5.4e-14 82.0 128 36.7
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 4.8e-10 68.9 62 51.6
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 5.8e-08 62.0 65 60.0
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 1.3e-07 60.8 128 27.3
Ah.02g120930 Amaranthus hybridus HOM05D055707 ORTHO05D008441 1.9e-06 57.0 40 65.0


User provided reference genes

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