Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 8.6e-31 136.3 69 100.0
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.5e-30 134.8 69 98.6
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 2.5e-30 134.8 69 98.6
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 7.3e-30 133.3 69 97.1
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 2.0e-27 125.2 69 92.8
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 4.4e-27 124.0 69 88.4
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 7.6e-27 123.2 69 91.3
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 6.4e-26 120.2 64 92.2
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 8.4e-26 119.8 66 87.9
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 8.4e-26 119.8 64 90.6
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 1.1e-25 119.4 68 86.8
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.4e-25 119.0 68 82.4
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 1.4e-25 119.0 66 87.9
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 1.4e-25 119.0 64 90.6
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 2.4e-25 118.2 66 87.9
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 3.2e-25 117.9 69 85.5
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 5.4e-25 117.1 65 86.2
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 7.1e-25 116.7 70 84.3
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 1.2e-24 115.9 69 82.6
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 1.6e-24 115.5 64 87.5
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 2.1e-24 115.2 61 86.9
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 2.1e-24 115.2 70 84.3
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 2.1e-24 115.2 69 81.2
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 2.1e-24 115.2 69 84.1
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 3.5e-24 114.4 64 84.4
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 4.6e-24 114.0 70 82.9
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 6.0e-24 113.6 61 85.2
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 7.8e-24 113.2 63 85.7
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 7.8e-24 113.2 64 82.8
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 1.3e-23 112.5 64 84.4
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 1.3e-23 112.5 64 84.4
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 1.3e-23 112.5 70 84.3
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 1.7e-23 112.1 64 81.2
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.7e-23 112.1 68 79.4
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 3.0e-23 111.3 64 82.8
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 3.0e-23 111.3 64 82.8
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 3.0e-23 111.3 64 82.8
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 3.9e-23 110.9 58 89.7
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 5.1e-23 110.5 68 80.9
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 5.1e-23 110.5 68 83.8
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 6.6e-23 110.2 66 81.8
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 6.6e-23 110.2 62 83.9
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 8.6e-23 109.8 69 76.8
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 8.6e-23 109.8 69 78.3
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 1.1e-22 109.4 69 81.2
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 1.5e-22 109.0 66 81.8
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 1.5e-22 109.0 64 82.8
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.9e-22 108.6 65 80.0
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 2.5e-22 108.2 64 81.2
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 4.3e-22 107.5 66 80.3
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 4.3e-22 107.5 64 81.2
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 5.6e-22 107.1 65 76.9
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 5.6e-22 107.1 68 80.9
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 5.6e-22 107.1 68 80.9
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 5.6e-22 107.1 69 76.8
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 5.6e-22 107.1 69 76.8
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 5.6e-22 107.1 68 76.5
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 5.6e-22 107.1 58 86.2
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 9.6e-22 106.3 68 77.9
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 9.6e-22 106.3 64 81.2
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 9.6e-22 106.3 64 81.2
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 1.2e-21 105.9 67 77.6
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.2e-21 105.9 60 78.3
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.2e-21 105.9 60 78.3
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.2e-21 105.9 60 78.3
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.2e-21 105.9 68 75.0
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 1.2e-21 105.9 68 76.5
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 1.2e-21 105.9 69 76.8
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 1.2e-21 105.9 69 76.8
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 1.6e-21 105.5 66 74.2
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 1.6e-21 105.5 70 81.4
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 2.1e-21 105.1 68 76.5
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 2.1e-21 105.1 68 77.9
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 2.1e-21 105.1 63 77.8
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 2.8e-21 104.8 69 75.4
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 2.8e-21 104.8 60 78.3
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 3.6e-21 104.4 66 75.8
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.6e-21 104.4 66 72.7
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.6e-21 104.4 66 72.7
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 3.6e-21 104.4 66 72.7
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 4.7e-21 104.0 68 75.0
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 1.1e-20 102.8 65 78.5
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 1.1e-20 102.8 65 78.5
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.1e-20 102.8 68 73.5
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 1.4e-20 102.4 64 78.1
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 2.4e-20 101.7 70 74.3
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 2.4e-20 101.7 60 76.7
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 2.4e-20 101.7 58 87.9
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 4.0e-20 100.9 65 76.9
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 6.9e-20 100.1 58 84.5
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 1.2e-19 99.4 69 72.5
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.5e-19 99.0 64 75.0
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.5e-19 99.0 64 75.0
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 1.5e-19 99.0 64 75.0
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 1.5e-19 99.0 64 71.9
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 1.3e-18 95.9 50 88.0
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 3.8e-18 94.4 65 70.8
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 3.8e-18 94.4 65 67.7
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 1.4e-17 92.4 62 74.2
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 1.9e-17 92.0 54 83.3
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 7.1e-17 90.1 57 75.4
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 2.7e-16 88.2 53 77.4
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 6.0e-08 60.5 49 63.3
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 3.9e-07 57.8 65 43.1


User provided reference genes

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