Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015014 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 2.8e-31 137.9 66 100.0
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 1.8e-14 82.0 48 81.2
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 5.4e-14 80.5 46 78.3
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 3.5e-13 77.8 63 60.3
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 5.9e-13 77.0 41 82.9
vmacro06868 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 2.3e-12 75.1 45 71.1
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 6.6e-12 73.6 46 73.9
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 1.5e-11 72.4 44 72.7
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 3.3e-11 71.2 61 49.2
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 4.3e-11 70.9 49 63.3
GSVIVG01032876001 Vitis vinifera HOM05D005592 ORTHO05D006067 5.6e-11 70.5 50 68.0
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 7.3e-11 70.1 47 66.0
Actinidia27252 Actinidia chinensis HOM05D005592 ORTHO05D006067 9.5e-11 69.7 40 80.0
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 9.5e-11 69.7 46 63.0
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 1.2e-10 69.3 50 66.0
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 1.6e-10 68.9 42 73.8
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 2.8e-10 68.2 43 67.4
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 3.6e-10 67.8 43 69.8
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 3.6e-10 67.8 43 69.8
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 4.7e-10 67.4 47 59.6
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 4.7e-10 67.4 47 61.7
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 4.7e-10 67.4 57 52.6
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 8.0e-10 66.6 40 75.0
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 8.0e-10 66.6 43 69.8
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 2.3e-09 65.1 41 68.3
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 4.0e-09 64.3 41 68.3
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 5.2e-09 63.9 43 65.1
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 5.2e-09 63.9 61 45.9
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 5.2e-09 63.9 61 45.9
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 5.2e-09 63.9 61 45.9
FAN06G1899 Fragaria x ananassa HOM05D005592 ORTHO05D006067 5.2e-09 63.9 61 45.9
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 8.9e-09 63.2 37 75.7
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 8.9e-09 63.2 45 55.6
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 1.2e-08 62.8 47 63.8
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 1.2e-08 62.8 43 60.5
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 1.2e-08 62.8 41 70.7
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 1.5e-08 62.4 41 68.3
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 2.0e-08 62.0 47 61.7
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 2.0e-08 62.0 43 60.5
SGA_v2.0_scaffold60G20866 Striga asiatica HOM05D005592 ORTHO05D006067 2.0e-08 62.0 46 65.2
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 3.4e-08 61.2 49 53.1
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 4.4e-08 60.8 47 55.3
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 4.4e-08 60.8 41 68.3
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 5.8e-08 60.5 54 51.9
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 7.5e-08 60.1 41 61.0
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 7.5e-08 60.1 40 65.0
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 9.8e-08 59.7 43 60.5
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 1.3e-07 59.3 41 63.4
Atru.chr12.227 Acer truncatum HOM05D005592 ORTHO05D006067 1.7e-07 58.9 47 53.2
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 1.7e-07 58.9 43 62.8
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 2.9e-07 58.2 41 58.5
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 3.7e-07 57.8 48 56.2
Eucgr.E00005 Eucalyptus grandis HOM05D005592 ORTHO05D006067 8.3e-07 56.6 43 51.2
MBI17_g23520_MAGBIO Magnolia biondii HOM05D005592 ORTHO05D006067 8.3e-07 56.6 45 57.8
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 8.3e-07 56.6 40 65.0
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 1.1e-06 56.2 40 67.5
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 1.1e-06 56.2 44 61.4
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 1.4e-06 55.8 45 60.0
Eucgr.E04345 Eucalyptus grandis HOM05D005592 ORTHO05D006067 1.4e-06 55.8 42 52.4
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 1.4e-06 55.8 45 62.2
THA.LOC104813079 Tarenaya hassleriana HOM05D005592 ORTHO05D006067 2.4e-06 55.1 39 59.0
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 3.2e-06 54.7 40 65.0
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 3.2e-06 54.7 41 61.0
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 5.4e-06 53.9 40 65.0
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 5.4e-06 53.9 44 59.1
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 7.0e-06 53.5 40 62.5
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 7.0e-06 53.5 41 61.0
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 7.0e-06 53.5 48 58.3
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 7.0e-06 53.5 54 51.9
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 9.2e-06 53.1 41 58.5
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 9.2e-06 53.1 44 54.5


User provided reference genes

Program Settings