Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 3.0e-99 365.2 183 100.0
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 5.3e-35 151.8 113 69.9
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 3.4e-34 149.1 113 69.0
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 5.8e-34 148.3 108 71.3
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 1.1e-29 134.0 105 64.8
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 2.9e-25 119.4 110 55.5
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 7.1e-24 114.8 109 52.3
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 2.1e-23 113.2 106 54.7
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 3.5e-23 112.5 111 54.1
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 4.6e-23 112.1 99 57.6
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 2.3e-22 109.8 115 48.7
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 3.9e-22 109.0 104 52.9
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 1.1e-21 107.5 97 54.6
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 1.1e-21 107.5 92 57.6
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 1.9e-21 106.7 153 43.8
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 1.9e-21 106.7 109 50.5
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 1.9e-21 106.7 96 52.1
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 1.9e-21 106.7 99 52.5
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 2.5e-21 106.3 113 49.6
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 2.5e-21 106.3 93 53.8
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 9.6e-21 104.4 123 45.5
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 1.3e-20 104.0 109 49.5
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 1.3e-20 104.0 109 49.5
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 1.3e-20 104.0 116 48.3
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 1.6e-20 103.6 91 54.9
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 1.6e-20 103.6 108 46.3
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 4.8e-20 102.1 119 48.7
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 4.8e-20 102.1 123 44.7
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 4.8e-20 102.1 114 47.4
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 6.2e-20 101.7 91 53.8
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 6.2e-20 101.7 116 47.4
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 1.4e-19 100.5 138 44.2
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 1.8e-19 100.1 92 58.7
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 2.4e-19 99.8 152 40.8
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.4e-19 99.8 147 40.8
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 2.4e-19 99.8 104 50.0
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 4.0e-19 99.0 106 43.4
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 4.0e-19 99.0 119 47.1
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 5.3e-19 98.6 90 54.4
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 5.3e-19 98.6 160 38.8
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 6.9e-19 98.2 103 47.6
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 1.2e-18 97.4 93 49.5
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 2.0e-18 96.7 102 50.0
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.0e-18 96.7 160 39.4
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 2.6e-18 96.3 146 41.1
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 2.6e-18 96.3 115 41.7
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 3.4e-18 95.9 123 43.9
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 4.5e-18 95.5 106 47.2
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 4.5e-18 95.5 160 39.4
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 5.8e-18 95.1 109 45.9
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 7.6e-18 94.7 101 48.5
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 7.6e-18 94.7 146 40.4
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 7.6e-18 94.7 101 47.5
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 7.6e-18 94.7 101 47.5
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 1.0e-17 94.4 89 49.4
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 1.3e-17 94.0 96 50.0
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 1.7e-17 93.6 123 43.1
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 1.7e-17 93.6 101 46.5
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 1.7e-17 93.6 123 43.1
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 1.7e-17 93.6 121 44.6
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 1.7e-17 93.6 144 40.3
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 1.7e-17 93.6 101 46.5
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 2.2e-17 93.2 107 45.8
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 2.9e-17 92.8 123 43.1
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 2.9e-17 92.8 101 46.5
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 3.8e-17 92.4 105 50.5
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 3.8e-17 92.4 110 50.9
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 3.8e-17 92.4 110 50.9
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 1.1e-16 90.9 101 46.5
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 1.1e-16 90.9 112 43.8
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 1.4e-16 90.5 164 39.6
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 1.9e-16 90.1 98 46.9
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 1.9e-16 90.1 90 48.9
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 1.9e-16 90.1 99 45.5
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 2.5e-16 89.7 101 47.5
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 3.2e-16 89.4 108 45.4
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 7.1e-16 88.2 90 51.1
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 9.3e-16 87.8 121 43.0
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 9.3e-16 87.8 103 46.6
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 1.2e-15 87.4 80 50.0
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 1.2e-15 87.4 104 47.1
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 3.5e-15 85.9 85 50.6
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 6.0e-15 85.1 102 46.1
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 6.0e-15 85.1 118 44.9
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 2.3e-14 83.2 97 47.4
TAR633G1834 Trochodendron aralioides HOM05D007411 ORTHO05D009025 8.7e-14 81.3 103 48.5
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 1.1e-13 80.9 97 47.4
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 1.1e-13 80.9 90 47.8
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 4.3e-13 79.0 100 43.0
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 5.7e-13 78.6 116 39.7
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 8.2e-12 74.7 77 53.2
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 2.4e-11 73.2 91 46.2
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 6.9e-11 71.6 77 50.6
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 1.2e-10 70.9 151 36.4
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 2.0e-10 70.1 97 42.3
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 7.7e-10 68.2 94 41.5
Peaxi162Scf00092g00337 Petunia axillaris HOM05D007411 ORTHO05D009025 4.2e-08 62.4 56 51.8
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 7.9e-07 58.2 102 35.3
Os01g0607100 Oryza sativa ssp. japonica HOM05D032292 ORTHO05D009025 6.7e-06 55.1 104 31.7


User provided reference genes

Program Settings