Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.3e-96 355.5 176 100.0
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 9.4e-82 307.0 175 86.9
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.4e-77 293.1 169 87.6
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 2.7e-76 288.9 175 82.3
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.2e-71 273.5 169 78.1
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.4e-69 265.8 169 76.3
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 7.0e-69 264.2 169 77.5
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.1e-69 263.8 167 74.9
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 3.5e-68 261.9 169 75.1
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 7.7e-68 260.8 167 74.3
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.3e-67 260.0 168 75.0
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.1e-66 256.9 165 77.6
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.9e-66 256.1 169 74.6
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.5e-66 255.8 169 74.6
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.5e-66 254.6 168 74.4
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.1e-65 252.7 169 72.8
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.8e-65 252.3 175 69.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 6.1e-65 251.1 171 71.9
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 8.0e-65 250.8 165 72.7
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 3.0e-64 248.8 166 73.5
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 4.0e-64 248.4 166 73.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 8.8e-64 247.3 166 72.3
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.5e-63 246.5 171 69.0
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.6e-63 245.7 166 72.9
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 4.4e-63 245.0 171 68.4
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.4e-63 245.0 171 69.0
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 7.5e-63 244.2 175 68.6
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.5e-63 244.2 165 72.1
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 9.8e-63 243.8 166 71.1
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.8e-62 242.3 171 69.6
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 4.9e-62 241.5 172 70.3
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 6.3e-62 241.1 172 69.2
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.1e-61 240.4 166 69.9
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.1e-61 240.4 171 67.8
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.4e-61 239.2 166 69.9
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.1e-61 238.8 169 71.0
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 3.1e-61 238.8 169 69.8
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.1e-61 238.4 172 69.8
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.0e-61 237.7 170 75.3
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 7.0e-61 237.7 166 72.3
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 9.2e-61 237.3 172 69.2
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-60 236.9 170 75.3
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.2e-60 236.9 172 68.6
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.6e-60 236.5 172 68.0
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.6e-60 236.5 169 71.0
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.6e-60 236.5 169 69.2
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.0e-60 236.1 169 68.6
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.7e-60 235.7 166 71.1
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.5e-60 235.3 170 74.7
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 4.5e-60 235.0 165 67.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 7.8e-60 234.2 166 70.5
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.0e-59 233.8 170 67.1
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.3e-59 233.4 164 68.9
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.3e-59 233.4 169 68.0
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.7e-59 233.0 163 70.6
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.3e-59 232.6 165 70.3
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.3e-59 232.6 169 67.5
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.9e-59 232.3 169 68.0
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.8e-59 231.9 165 68.5
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 6.6e-59 231.1 169 68.6
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 6.6e-59 231.1 166 68.7
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.5e-58 229.9 168 67.3
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.5e-58 229.9 165 69.7
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 4.3e-58 228.4 165 68.5
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 9.5e-58 227.3 165 68.5
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.1e-57 226.1 169 69.2
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 6.8e-56 221.1 166 67.5
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 6.8e-56 221.1 164 68.3
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 8.9e-56 220.7 166 68.1
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.0e-55 219.5 173 61.8
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 2.6e-55 219.2 164 68.3
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.4e-55 218.4 171 64.3
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 5.7e-55 218.0 165 65.5
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 5.7e-55 218.0 169 67.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.3e-54 216.9 169 67.5
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 4.9e-54 214.9 157 68.8
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.4e-54 214.5 166 65.1
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 6.4e-54 214.5 166 64.5
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 8.3e-54 214.2 166 63.9
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 8.3e-54 214.2 167 64.7
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.1e-53 213.8 166 64.5
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 2.4e-53 212.6 174 61.5
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.2e-52 210.3 164 64.6
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.2e-52 210.3 166 63.9
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 3.5e-52 208.8 171 62.6
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 7.8e-52 207.6 167 64.7
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 7.8e-52 207.6 167 64.7
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 7.8e-52 207.6 166 64.5
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 7.8e-52 207.6 173 64.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.0e-51 207.2 167 64.7
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.0e-51 207.2 166 62.0
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.7e-51 206.5 165 64.8
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 3.9e-51 205.3 165 64.8
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 6.6e-51 204.5 156 65.4
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 6.6e-51 204.5 165 63.6
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 6.6e-51 204.5 165 63.6
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 8.6e-51 204.1 168 63.7
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-50 203.8 167 63.5
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-50 203.8 167 63.5
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.5e-50 202.6 167 62.9
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 4.3e-50 201.8 168 61.9
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 4.3e-50 201.8 165 64.2
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 5.6e-50 201.4 169 63.3
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.3e-50 201.1 165 63.0
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.2e-49 200.3 165 64.2
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.1e-49 199.5 159 64.2
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.7e-49 198.4 172 62.2
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.2e-49 198.0 169 61.5
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 6.2e-49 198.0 163 61.3
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.0e-48 195.3 126 73.8
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.5e-47 193.4 131 71.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 3.7e-46 188.7 167 58.7
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.4e-45 186.0 166 59.6
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.4e-45 186.0 166 59.6
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 7.8e-44 181.0 126 72.2
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.5e-42 176.8 162 58.0
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.9e-42 176.4 137 65.0
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 2.5e-42 176.0 163 57.1
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.3e-40 169.5 166 55.4
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.3e-40 169.5 124 66.1
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 5.2e-40 168.3 127 68.5
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 2.6e-39 166.0 169 56.2
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 3.2e-37 159.1 130 63.1
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.6e-36 156.8 127 63.8
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 3.5e-36 155.6 112 68.8
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 5.1e-35 151.8 162 50.0
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 6.6e-35 151.4 119 66.4
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-34 150.6 170 50.6
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.1e-33 146.4 100 69.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 6.2e-33 144.8 136 51.5
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 4.0e-32 142.1 126 55.6
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.8e-32 141.4 157 49.7
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 6.8e-32 141.4 159 48.4
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 6.8e-32 141.4 173 48.6
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.7e-30 136.7 126 58.7
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.9e-29 133.3 156 50.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 7.8e-28 127.9 81 77.8
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.1e-26 124.0 121 47.1
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.9e-26 123.2 135 45.2
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.8e-25 119.4 90 65.6
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 4.4e-23 112.1 124 41.9
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.4e-23 112.1 171 41.5
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 8.4e-22 107.8 66 72.7
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.1e-20 103.2 149 41.6
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 3.3e-18 95.9 63 65.1
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 5.6e-18 95.1 107 44.9
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.8e-17 92.0 69 65.2
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.1e-16 90.9 74 62.2
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.1e-16 89.4 91 45.1
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.6e-15 86.3 65 73.8
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 3.4e-15 85.9 68 63.2
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.3e-14 84.0 63 74.6
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 2.7e-12 76.3 115 37.4
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.7e-12 76.3 43 79.1
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 3.5e-12 75.9 83 51.8
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 5.1e-11 72.0 63 49.2
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 6.7e-11 71.6 62 59.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.5e-10 70.5 58 62.1
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.5e-10 70.5 58 62.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 5.6e-10 68.6 82 45.1
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.6e-10 67.8 54 63.0
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 2.8e-09 66.2 116 37.9
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.1e-08 64.3 84 39.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.1e-08 62.8 90 43.3
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.2e-07 60.8 80 38.8
AUR62010916 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.5e-07 60.5 42 71.4
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.7e-06 57.0 60 50.0
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 2.9e-06 56.2 39 71.8


User provided reference genes

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