Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014985 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 8.7e-75 283.5 137 100.0
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 1.4e-40 169.9 105 76.2
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.5e-39 166.4 105 74.3
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 4.5e-39 164.9 105 74.3
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 7.7e-39 164.1 105 73.3
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 1.7e-38 162.9 105 74.3
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 1.6e-36 156.4 103 76.7
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 2.0e-34 149.4 105 72.4
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 7.4e-34 147.5 105 67.6
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 6.3e-33 144.4 105 65.7
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 4.1e-32 141.7 105 64.8
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 9.1e-32 140.6 105 61.0
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 1.5e-31 139.8 105 63.8
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 1.5e-31 139.8 105 63.8
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 2.0e-31 139.4 103 67.0
Aqoxy102s001 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 2.6e-31 139.0 105 61.0
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 2.6e-31 139.0 105 61.0
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 4.5e-31 138.3 105 62.9
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 4.5e-31 138.3 105 63.8
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 1.0e-30 137.1 105 60.0
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 1.7e-30 136.3 129 55.0
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 2.9e-30 135.6 112 59.8
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 5.0e-30 134.8 105 61.0
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 6.5e-30 134.4 103 65.0
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 6.5e-30 134.4 129 55.0
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 1.1e-29 133.7 105 60.0
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 1.9e-29 132.9 105 63.8
Nitab4.5_0000525g0110 Nicotiana tabacum HOM05D004338 ORTHO05D005205 1.9e-29 132.9 103 65.0
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 2.5e-29 132.5 105 62.9
Nn1g02554 Nelumbo nucifera HOM05D004338 ORTHO05D005205 2.5e-29 132.5 105 61.0
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 3.2e-29 132.1 105 61.0
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 3.2e-29 132.1 103 65.0
Sabra08G0122600 Salix brachista HOM05D004338 ORTHO05D005205 5.5e-29 131.3 103 61.2
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 7.2e-29 131.0 107 59.8
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 7.2e-29 131.0 105 60.0
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 1.2e-28 130.2 105 61.0
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 3.6e-28 128.6 105 58.1
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 4.7e-28 128.3 105 60.0
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 6.1e-28 127.9 103 58.3
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 8.0e-28 127.5 105 61.0
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 1.0e-27 127.1 94 64.9
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 1.0e-27 127.1 105 58.1
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 1.4e-27 126.7 103 62.1
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 1.8e-27 126.3 109 56.0
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 2.3e-27 125.9 103 58.3
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 3.9e-27 125.2 105 59.0
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 5.2e-27 124.8 105 59.0
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 5.2e-27 124.8 105 59.0
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 5.2e-27 124.8 131 50.4
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 8.8e-27 124.0 105 52.4
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 1.5e-26 123.2 103 61.2
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 5.7e-26 121.3 131 48.9
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 2.2e-25 119.4 106 54.7
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 3.7e-25 118.6 105 55.2
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 3.7e-25 118.6 131 48.1
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 1.4e-24 116.7 105 56.2
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 4.1e-24 115.2 104 55.8
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 4.1e-24 115.2 103 57.3
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 7.0e-24 114.4 104 56.7
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 9.1e-24 114.0 131 52.7
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 9.1e-24 114.0 105 54.3
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 1.2e-23 113.6 103 59.2
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 4.5e-23 111.7 105 56.2
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 4.5e-23 111.7 105 55.2
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 5.9e-23 111.3 105 52.4
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 5.9e-23 111.3 106 56.6
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 7.7e-23 110.9 103 55.3
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 1.0e-22 110.5 105 55.2
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 1.3e-22 110.2 103 54.4
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 2.2e-22 109.4 105 54.3
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 2.2e-22 109.4 105 56.2
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 2.2e-22 109.4 104 56.7
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 2.9e-22 109.0 105 52.4
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 3.8e-22 108.6 105 55.2
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 3.8e-22 108.6 105 53.3
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 5.0e-22 108.2 103 56.3
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 5.0e-22 108.2 105 51.4
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 5.0e-22 108.2 105 57.1
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 6.5e-22 107.8 105 49.5
Hund07295 Selenicereus undatus HOM05D004338 ORTHO05D005205 8.5e-22 107.5 105 50.5
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 1.1e-21 107.1 103 55.3
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 2.5e-21 105.9 105 57.1
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 3.2e-21 105.5 105 53.3
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 7.2e-21 104.4 131 46.6
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 7.2e-21 104.4 105 55.2
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 9.4e-21 104.0 105 49.5
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 9.4e-21 104.0 105 49.5
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 9.4e-21 104.0 105 52.4
HPP92_009627 Vanilla planifolia HOM05D004338 ORTHO05D005205 9.4e-21 104.0 116 47.4
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 3.6e-20 102.1 131 45.8
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 4.7e-20 101.7 131 45.0
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 6.1e-20 101.3 105 50.5
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 8.0e-20 100.9 63 68.3
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 1.4e-19 100.1 105 54.3
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 2.3e-19 99.4 105 47.6
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 3.0e-19 99.0 103 56.3
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 4.0e-19 98.6 69 63.8
CDE03G0382 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 4.0e-19 98.6 114 46.5
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 2.8e-17 92.4 114 48.2
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 3.7e-17 92.0 118 45.8
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 6.3e-17 91.3 105 49.5
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 8.3e-17 90.9 116 39.7
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 1.4e-16 90.1 114 46.5
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 1.8e-16 89.7 105 50.5
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.8e-16 89.7 114 47.4
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 2.4e-16 89.4 105 47.6
AL8G16540 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 4.1e-16 88.6 104 51.0
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 5.3e-16 88.2 114 45.6
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 5.3e-16 88.2 114 45.6
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 5.3e-16 88.2 114 45.6
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 5.3e-16 88.2 114 45.6
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 5.3e-16 88.2 114 45.6
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 9.1e-16 87.4 105 47.6
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 9.1e-16 87.4 105 49.5
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 2.0e-15 86.3 105 50.5
CSS0000736 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 4.5e-15 85.1 41 85.4
CARHR179760 Cardamine hirsuta HOM05D004338 ORTHO05D005205 1.0e-14 84.0 105 51.4
CSS0016797 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 2.2e-14 82.8 72 52.8
CSS0047496 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 2.2e-14 82.8 72 52.8
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 2.2e-14 82.8 107 46.7
SEGI_02702 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 2.9e-14 82.4 53 71.7
MD11G1069400 Malus domestica HOM05D004338 ORTHO05D005205 3.6e-12 75.5 38 78.9
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 8.0e-12 74.3 115 44.3
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 8.0e-12 74.3 115 44.3
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 8.0e-12 74.3 115 44.3
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 1.0e-11 73.9 115 43.5
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 1.4e-11 73.6 106 47.2
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 1.4e-11 73.6 106 47.2
RcHm_v2.0_Chr4g0389581 Rosa chinensis HOM05D004338 ORTHO05D005205 1.4e-11 73.6 41 78.0
Actinidia04492 Actinidia chinensis HOM05D004338 ORTHO05D005205 6.3e-09 64.7 55 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 1.1e-08 63.9 45 60.0
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 1.1e-08 63.9 117 32.5
AagrBONN_evm.TU.Sc2ySwM_117.2360 Anthoceros agrestis HOM05D004338 ORTHO05D005205 9.1e-08 60.8 50 52.0
unitig_748.g7312 Utricularia gibba HOM05D004338 ORTHO05D005205 3.5e-07 58.9 125 32.0
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 5.0e-06 55.1 41 53.7


User provided reference genes

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