Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.2e-89 333.2 178 100.0
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.2e-77 290.4 188 86.2
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.2e-76 290.0 169 94.7
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.2e-76 290.0 169 94.7
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 6.2e-57 224.6 177 70.6
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 1.2e-55 220.3 177 68.9
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 2.6e-55 219.2 177 71.2
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 9.9e-55 217.2 174 71.3
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 9.9e-55 217.2 174 74.1
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.3e-54 216.9 177 68.9
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.1e-53 213.8 177 65.5
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 3.2e-53 212.2 169 67.5
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 3.2e-53 212.2 176 68.8
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 3.5e-52 208.8 177 67.2
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 3.9e-51 205.3 177 63.8
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 6.7e-51 204.5 179 66.5
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.1e-50 203.8 178 64.6
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 4.3e-50 201.8 171 64.3
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 5.6e-50 201.4 177 62.7
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.6e-50 201.4 177 63.8
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 7.4e-50 201.1 172 66.9
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 7.4e-50 201.1 177 64.4
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 2.1e-49 199.5 177 63.8
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 2.1e-49 199.5 177 66.1
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 2.1e-49 199.5 177 65.5
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 2.8e-49 199.1 177 63.3
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 4.8e-49 198.4 178 62.4
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 4.8e-49 198.4 177 62.7
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.1e-49 197.6 177 63.3
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 1.1e-48 197.2 177 63.3
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 1.4e-48 196.8 176 63.6
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.4e-48 196.8 177 65.5
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 1.8e-48 196.4 168 62.5
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.1e-48 195.7 176 62.5
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 4.0e-48 195.3 178 64.0
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 5.3e-48 194.9 175 63.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.2e-47 193.7 172 65.7
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 1.5e-47 193.4 177 63.8
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 2.0e-47 193.0 180 61.7
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 2.6e-47 192.6 181 60.8
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 2.6e-47 192.6 176 63.1
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 2.6e-47 192.6 176 63.1
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 2.6e-47 192.6 207 58.0
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 2.6e-47 192.6 170 62.4
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 3.4e-47 192.2 179 62.0
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 3.4e-47 192.2 178 62.4
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 5.8e-47 191.4 176 61.4
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 7.6e-47 191.0 168 60.1
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 7.6e-47 191.0 168 60.1
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 7.6e-47 191.0 175 62.3
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 9.9e-47 190.7 179 61.5
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 9.9e-47 190.7 175 61.7
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.3e-46 190.3 176 62.5
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 1.3e-46 190.3 173 63.0
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 2.2e-46 189.5 179 62.6
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 3.8e-46 188.7 174 61.5
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 3.8e-46 188.7 176 64.2
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 4.9e-46 188.3 176 61.9
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.1e-45 187.2 177 62.1
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 1.1e-45 187.2 176 59.1
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 1.1e-45 187.2 175 60.6
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.4e-45 186.8 174 62.6
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.9e-45 186.4 174 62.6
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 2.4e-45 186.0 176 61.9
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.4e-45 186.0 175 61.7
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 2.4e-45 186.0 176 63.6
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 3.2e-45 185.7 184 62.0
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 4.2e-45 185.3 174 62.6
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 5.5e-45 184.9 177 62.1
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 7.1e-45 184.5 178 61.8
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 7.1e-45 184.5 175 61.7
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 7.1e-45 184.5 177 60.5
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 9.3e-45 184.1 178 59.6
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 9.3e-45 184.1 176 61.4
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 1.2e-44 183.7 177 59.9
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 1.6e-44 183.3 180 62.2
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 1.6e-44 183.3 178 58.4
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 2.1e-44 183.0 176 60.2
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 2.1e-44 183.0 181 57.5
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 2.7e-44 182.6 178 63.5
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 4.6e-44 181.8 177 60.5
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 4.6e-44 181.8 176 62.5
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 6.0e-44 181.4 174 60.9
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 7.9e-44 181.0 177 58.8
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 7.9e-44 181.0 174 60.3
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.3e-43 180.3 179 60.3
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.8e-43 179.9 179 60.3
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 2.3e-43 179.5 177 57.1
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.3e-43 179.5 177 58.2
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 2.3e-43 179.5 177 58.2
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 3.0e-43 179.1 172 61.6
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 3.9e-43 178.7 177 58.8
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 8.7e-43 177.6 180 58.9
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 1.1e-42 177.2 175 60.0
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 1.5e-42 176.8 181 60.2
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.9e-42 176.4 179 60.3
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.9e-42 176.4 179 59.2
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.5e-42 176.0 177 58.8
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 2.5e-42 176.0 242 49.2
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 4.3e-42 175.3 175 56.0
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 9.6e-42 174.1 177 59.3
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.6e-41 173.3 171 62.6
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 2.1e-41 172.9 179 59.2
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 2.1e-41 172.9 216 51.4
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 2.8e-41 172.6 172 59.3
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 3.7e-41 172.2 176 58.5
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 3.7e-41 172.2 177 58.8
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 3.7e-41 172.2 179 58.7
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 3.7e-41 172.2 177 58.8
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 3.7e-41 172.2 175 58.3
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 1.8e-40 169.9 181 57.5
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 3.1e-40 169.1 181 57.5
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 3.1e-40 169.1 178 56.7
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 4.0e-40 168.7 177 57.1
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 5.3e-40 168.3 178 56.2
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 1.2e-39 167.2 179 58.7
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 1.2e-39 167.2 174 57.5
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.6e-39 166.0 176 55.7
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.6e-39 166.0 177 57.1
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.0e-38 164.1 176 55.7
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 3.8e-38 162.2 226 44.2
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 3.8e-38 162.2 145 61.4
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.8e-38 162.2 176 56.8
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 8.4e-38 161.0 177 54.2
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.1e-37 160.6 177 55.9
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.1e-37 160.6 177 55.9
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 4.2e-37 158.7 263 42.2
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 5.5e-37 158.3 173 55.5
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 7.1e-37 157.9 177 54.8
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 1.6e-36 156.8 112 73.2
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.1e-36 156.4 176 56.2
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 3.5e-36 155.6 180 54.4
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 6.0e-36 154.8 212 50.0
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 1.3e-35 153.7 177 52.5
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.8e-35 153.3 163 55.8
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 2.5e-34 149.4 186 51.1
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 7.4e-34 147.9 176 50.6
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.6e-33 146.7 133 63.9
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 2.2e-33 146.4 140 59.3
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.8e-33 145.2 177 50.8
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 8.2e-33 144.4 177 50.3
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 5.3e-32 141.7 177 49.7
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 6.9e-32 141.4 111 69.4
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 9.0e-32 141.0 127 59.8
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.4e-31 139.0 177 49.2
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.4e-31 139.0 177 49.2
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 3.4e-31 139.0 177 49.2
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 7.6e-31 137.9 180 48.9
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 7.6e-31 137.9 169 52.7
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 4.2e-29 132.1 162 53.7
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 5.5e-29 131.7 178 51.1
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 1.6e-28 130.2 135 58.5
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 1.0e-27 127.5 180 45.0
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 3.9e-27 125.6 131 58.0
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 8.8e-27 124.4 131 55.0
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 5.7e-26 121.7 141 52.5
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 6.3e-25 118.2 105 66.7
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 9.1e-24 114.4 176 40.3
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.0e-23 113.2 132 52.3
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.6e-23 112.8 69 82.6
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 3.4e-23 112.5 176 42.6
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 3.4e-23 112.5 124 54.8
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.7e-22 110.2 79 72.2
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 3.8e-22 109.0 87 67.8
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.2e-21 105.9 132 52.3
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 5.5e-21 105.1 136 47.8
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 9.4e-21 104.4 68 76.5
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 1.6e-20 103.6 124 57.3
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 2.3e-19 99.8 110 56.4
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 3.3e-18 95.9 63 77.8
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 5.7e-18 95.1 74 67.6
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.3e-17 94.0 147 46.3
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 1.2e-15 87.4 152 42.1
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 2.9e-14 82.8 191 31.9
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 3.2e-13 79.3 118 39.0
Haze_22054 Corylus avellana HOM05D003593 ORTHO05D004064 2.1e-12 76.6 46 80.4
CSS0001594 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.0e-11 74.3 65 72.3
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 3.0e-11 72.8 69 59.4
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 1.1e-10 70.9 104 44.2
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 5.7e-10 68.6 82 52.4
Mapoly0058s0071 Marchantia polymorpha HOM05D003593 ORTHO05D004064 1.2e-07 60.8 93 34.4
MCO03G348 Micromonas commoda HOM05D003593 ORTHO05D004064 1.7e-06 57.0 92 33.7
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 5.0e-06 55.5 153 29.4


User provided reference genes

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