Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.9e-119 431.4 205 100.0
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 8.7e-87 323.9 194 78.9
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 1.9e-86 322.8 201 78.1
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 4.3e-86 321.6 194 80.9
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 7.3e-86 320.9 202 75.7
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 9.9e-83 310.5 199 75.4
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 4.9e-82 308.1 201 72.1
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 8.4e-82 307.4 197 72.6
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 1.6e-77 293.1 197 70.6
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 6.4e-74 281.2 192 71.9
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.4e-73 280.0 194 72.2
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.4e-73 280.0 194 69.1
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.6e-72 276.6 201 65.7
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 7.9e-72 274.2 197 67.0
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.3e-71 273.5 200 66.5
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 1.3e-71 273.5 196 67.3
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 2.3e-71 272.7 194 68.0
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 3.9e-71 271.9 267 54.3
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 5.1e-71 271.6 204 64.7
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 6.7e-71 271.2 198 65.7
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 1.1e-70 270.4 202 66.3
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 9.6e-70 267.3 196 64.8
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.3e-69 266.9 199 64.3
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 1.3e-69 266.9 197 65.5
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.1e-69 266.2 196 63.3
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 3.7e-69 265.4 204 62.3
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.7e-69 265.4 196 63.8
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 3.7e-69 265.4 196 63.8
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 3.7e-69 265.4 200 65.0
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 8.1e-69 264.2 197 64.0
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 1.1e-68 263.8 198 64.1
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 1.1e-68 263.8 193 64.8
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 3.1e-68 262.3 202 62.4
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 5.3e-68 261.5 197 65.5
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 9.0e-68 260.8 213 60.1
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 1.2e-67 260.4 195 66.2
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 2.0e-67 259.6 195 65.6
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 3.4e-67 258.8 197 61.9
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 4.5e-67 258.5 195 63.1
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 4.5e-67 258.5 195 64.1
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 4.5e-67 258.5 201 63.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 4.5e-67 258.5 192 65.1
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 5.8e-67 258.1 196 62.8
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.7e-66 256.5 214 59.8
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.7e-66 256.5 195 64.1
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 2.2e-66 256.1 195 62.1
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 2.2e-66 256.1 196 61.2
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.2e-66 256.1 195 64.6
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 2.9e-66 255.8 196 62.2
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 6.5e-66 254.6 196 61.2
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 8.4e-66 254.2 211 60.7
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 2.5e-65 252.7 195 63.6
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 3.2e-65 252.3 197 60.9
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.2e-65 251.9 215 59.1
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.5e-65 251.5 195 62.6
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 5.5e-65 251.5 195 62.6
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 5.5e-65 251.5 195 63.6
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 7.1e-65 251.1 125 90.4
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 2.7e-64 249.2 197 61.9
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 3.5e-64 248.8 196 59.2
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 3.5e-64 248.8 199 59.8
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.0e-63 247.3 197 61.4
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 1.3e-63 246.9 191 61.8
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 1.3e-63 246.9 195 62.1
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 1.3e-63 246.9 194 60.8
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 3.9e-63 245.4 200 60.5
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 6.7e-63 244.6 195 59.5
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 6.7e-63 244.6 132 81.8
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.1e-62 243.8 185 61.6
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.5e-62 243.4 220 57.7
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 3.3e-62 242.3 201 60.7
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 3.3e-62 242.3 197 61.4
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 9.6e-62 240.7 202 57.9
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 9.6e-62 240.7 200 60.0
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.3e-61 240.4 220 57.3
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.8e-61 239.2 196 61.7
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 6.3e-61 238.0 134 79.9
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 9.0e-60 234.2 135 76.3
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 2.0e-59 233.0 255 49.0
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 2.6e-59 232.6 122 84.4
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.0e-58 230.7 201 59.2
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.7e-58 229.9 192 55.2
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 3.8e-58 228.8 177 63.3
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.1e-57 227.3 200 57.5
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.4e-57 226.9 129 76.7
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.5e-57 226.1 195 59.0
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 4.2e-57 225.3 195 53.8
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 5.5e-57 224.9 195 53.8
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 9.3e-57 224.2 123 78.9
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 7.9e-56 221.1 205 56.1
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.3e-55 219.5 123 74.8
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 5.1e-55 218.4 205 57.1
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 9.7e-54 214.2 151 66.2
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 1.3e-53 213.8 192 55.2
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.5e-51 206.8 196 54.1
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 2.5e-49 199.5 260 45.4
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 2.7e-48 196.1 145 66.9
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 3.6e-48 195.7 164 59.1
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 4.6e-48 195.3 131 67.2
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.8e-47 193.4 124 66.1
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 8.8e-47 191.0 95 87.4
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 2.0e-46 189.9 161 60.2
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 4.4e-46 188.7 114 70.2
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 5.7e-46 188.3 163 54.6
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 6.9e-44 181.4 127 68.5
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 6.5e-42 174.9 161 56.5
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 3.2e-41 172.6 164 52.4
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 7.2e-41 171.4 113 59.3
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 5.2e-39 165.2 113 59.3
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.0e-38 163.3 111 64.0
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 4.4e-38 162.2 160 54.4
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 4.8e-37 158.7 136 61.8
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.8e-36 156.8 202 44.6
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 7.0e-36 154.8 139 57.6
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 2.5e-33 146.4 100 69.0
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 5.5e-33 145.2 134 54.5
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.2e-30 137.5 163 47.9
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.2e-30 137.5 102 56.9
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 1.5e-30 137.1 272 36.4
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 2.2e-29 133.3 106 51.9
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 3.1e-28 129.4 63 87.3
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 3.8e-26 122.5 63 81.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 8.5e-26 121.3 58 91.4
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 4.2e-25 119.0 100 44.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 7.2e-25 118.2 106 49.1
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 1.2e-24 117.5 96 53.1
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 8.8e-23 111.3 95 49.5
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 1.5e-22 110.5 123 52.0
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 7.7e-19 98.2 114 49.1
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 1.0e-18 97.8 104 43.3
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.7e-18 97.1 93 40.9
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 8.3e-13 78.2 116 39.7
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 2.4e-12 76.6 115 39.1
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 2.4e-12 76.6 42 73.8
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 7.0e-12 75.1 114 41.2
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 9.2e-12 74.7 117 40.2
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.5e-11 72.8 35 82.9
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 3.5e-11 72.8 35 82.9
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 5.9e-11 72.0 97 42.3
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 2.3e-07 60.1 31 80.6
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 2.3e-07 60.1 109 35.8
SHI05088 Sapria himalayana HOM05D005520 ORTHO05D006633 2.0e-06 57.0 118 29.7


User provided reference genes

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