Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014966 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 0.0e+00 1281.2 666 100.0
CSS0042071 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 0.0e+00 1223.4 666 96.1
CSS0022552 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 2.4e-271 938.7 672 76.2
Actinidia21950 Actinidia chinensis HOM05D003622 ORTHO05D004453 3.9e-269 931.4 654 76.1
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 4.3e-268 927.9 658 76.0
Dinv36478 Davidia involucrata HOM05D003622 ORTHO05D004453 8.3e-264 913.7 670 73.9
Hma1.2p1_0343F.1_g130930 Hydrangea macrophylla HOM05D003622 ORTHO05D004453 8.4e-248 860.5 660 70.8
vmacro07722 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 2.3e-245 852.4 655 71.5
Rhsim01G0061400 Rhododendron simsii HOM05D003622 ORTHO05D004453 1.3e-240 836.6 640 71.1
vmacro06154 Vaccinium macrocarpon HOM05D003622 ORTHO05D004453 1.1e-231 807.0 657 67.3
Rhsim03G0251600 Rhododendron simsii HOM05D003622 ORTHO05D004453 7.4e-228 794.3 647 68.5
GSVIVG01015594001 Vitis vinifera HOM05D003622 ORTHO05D004453 2.9e-224 782.3 636 65.9
Atru.chr7.1951 Acer truncatum HOM05D003622 ORTHO05D004453 2.7e-222 775.8 655 63.7
Actinidia07317 Actinidia chinensis HOM05D003622 ORTHO05D004453 1.0e-221 773.9 642 68.1
Duzib168G1318 Durio zibethinus HOM05D003622 ORTHO05D004453 1.5e-220 770.0 651 64.7
QL02p089888 Quercus lobata HOM05D003622 ORTHO05D004453 9.6e-220 767.3 657 62.1
Duzib187G1700 Durio zibethinus HOM05D003622 ORTHO05D004453 2.9e-216 755.7 651 63.4
COL.COLO4_35161 Corchorus olitorius HOM05D003622 ORTHO05D004453 6.5e-216 754.6 646 63.6
Cpa.g.sc46.43 Carica papaya HOM05D003622 ORTHO05D004453 1.9e-215 753.1 652 63.5
Potri.018G126100 Populus trichocarpa HOM05D003622 ORTHO05D004453 3.2e-215 752.3 649 63.0
Cfa003424 Carpinus fangiana HOM05D003622 ORTHO05D004453 7.1e-215 751.1 671 60.7
Sabra18G0107100 Salix brachista HOM05D003622 ORTHO05D004453 8.7e-213 744.2 649 62.1
Gohir.A08G088500 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.3e-211 740.3 652 61.7
Glyma.17G111200 Glycine max HOM05D003622 ORTHO05D004453 3.1e-210 735.7 652 62.1
Manes.06G047000 Manihot esculenta HOM05D003622 ORTHO05D004453 1.5e-209 733.4 655 61.5
Ciclev10007427m.g Citrus clementina HOM05D003622 ORTHO05D004453 7.6e-209 731.1 658 61.6
Gorai.010G061100 Gossypium raimondii HOM05D003622 ORTHO05D004453 7.6e-209 731.1 652 62.3
VMungo1215G2226 Vigna mungo HOM05D003622 ORTHO05D004453 1.3e-208 730.3 652 61.5
Phvul.003G169000 Phaseolus vulgaris HOM05D003622 ORTHO05D004453 2.9e-208 729.2 652 60.9
Glyma.13G160300 Glycine max HOM05D003622 ORTHO05D004453 1.4e-207 726.9 652 61.5
Thecc.09G132400 Theobroma cacao HOM05D003622 ORTHO05D004453 1.9e-207 726.5 648 61.0
Manes.14G116100 Manihot esculenta HOM05D003622 ORTHO05D004453 3.2e-207 725.7 655 61.4
Gorai.013G235300 Gossypium raimondii HOM05D003622 ORTHO05D004453 4.2e-207 725.3 655 59.8
Nitab4.5_0002008g0030 Nicotiana tabacum HOM05D003622 ORTHO05D004453 9.3e-207 724.2 658 62.0
Nitab4.5_0003393g0070 Nicotiana tabacum HOM05D003622 ORTHO05D004453 1.2e-206 723.8 658 61.7
Gohir.D06G052700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 7.9e-206 721.1 652 61.5
Lj4g0015305 Lotus japonicus HOM05D003622 ORTHO05D004453 1.0e-205 720.7 652 60.0
Peaxi162Scf00088g01327 Petunia axillaris HOM05D003622 ORTHO05D004453 1.0e-205 720.7 658 62.2
CiPaw.03G248700 Carya illinoinensis HOM05D003622 ORTHO05D004453 3.9e-205 718.8 658 59.4
Gohir.A06G053800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 3.9e-205 718.8 652 61.5
PGSC0003DMG400030907 Solanum tuberosum HOM05D003622 ORTHO05D004453 8.7e-205 717.6 649 62.2
Potri.006G065600 Populus trichocarpa HOM05D003622 ORTHO05D004453 4.3e-204 715.3 652 60.1
Lalb_Chr13g0301561 Lupinus albus HOM05D003622 ORTHO05D004453 7.4e-204 714.5 653 60.2
Solyc07g007890.3 Solanum lycopersicum HOM05D003622 ORTHO05D004453 9.7e-204 714.1 649 62.1
CAN.G1266.4 Capsicum annuum HOM05D003622 ORTHO05D004453 3.7e-203 712.2 659 61.5
Sopen07g003790 Solanum pennellii HOM05D003622 ORTHO05D004453 3.7e-203 712.2 649 61.9
CANSAT11G0379 Cannabis sativa HOM05D003622 ORTHO05D004453 1.4e-202 710.3 652 59.5
Sabra06G0047800 Salix brachista HOM05D003622 ORTHO05D004453 6.9e-202 708.0 654 59.8
TAR625G0175 Trochodendron aralioides HOM05D003622 ORTHO05D004453 1.5e-201 706.8 654 60.9
Gorai.004G107500 Gossypium raimondii HOM05D003622 ORTHO05D004453 1.0e-200 704.1 651 59.1
arahy.Tifrunner.gnm1.ann1.HD4WN1 Arachis hypogaea HOM05D003622 ORTHO05D004453 2.9e-200 702.6 652 58.7
Lalb_Chr12g0198231 Lupinus albus HOM05D003622 ORTHO05D004453 4.2e-199 698.7 653 59.3
arahy.Tifrunner.gnm1.ann1.DJE2D0 Arachis hypogaea HOM05D003622 ORTHO05D004453 1.6e-198 696.8 652 58.7
Gohir.A13G200800 Gossypium hirsutum HOM05D003622 ORTHO05D004453 1.6e-198 696.8 654 57.8
Gohir.D08G099700 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.1e-198 696.4 625 61.3
MSTRG.26437 Avicennia marina HOM05D003622 ORTHO05D004453 2.7e-198 696.0 650 60.3
CiPaw.04G174900 Carya illinoinensis HOM05D003622 ORTHO05D004453 4.6e-198 695.3 628 60.2
MELO3C010313.2 Cucumis melo HOM05D003622 ORTHO05D004453 5.1e-197 691.8 656 58.1
Ca_06943_v3 Cicer arietinum L. HOM05D003622 ORTHO05D004453 4.4e-196 688.7 651 58.8
SalBow1G3694 Salvia bowleyana HOM05D003622 ORTHO05D004453 7.4e-196 688.0 654 59.0
Medtr4g115350 Medicago truncatula HOM05D003622 ORTHO05D004453 1.3e-195 687.2 651 57.8
CsaV3_1G026740 Cucumis sativus L. HOM05D003622 ORTHO05D004453 2.2e-195 686.4 656 57.8
Prupe.7G248800 Prunus persica HOM05D003622 ORTHO05D004453 3.7e-195 685.6 648 58.5
TAR636G0579 Trochodendron aralioides HOM05D003622 ORTHO05D004453 4.1e-194 682.2 599 61.8
RcHm_v2.0_Chr2g0087611 Rosa chinensis HOM05D003622 ORTHO05D004453 1.3e-192 677.2 665 57.3
DCAR_020889 Daucus carota HOM05D003622 ORTHO05D004453 2.2e-192 676.4 670 57.8
DCAR_009323 Daucus carota HOM05D003622 ORTHO05D004453 5.0e-192 675.2 648 59.0
FAN26G1654 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.0e-192 675.2 669 56.7
Sed0001481 Sechium edule HOM05D003622 ORTHO05D004453 5.0e-192 675.2 655 56.8
Lalb_Chr07g0179261 Lupinus albus HOM05D003622 ORTHO05D004453 1.1e-191 674.1 652 57.2
MD15G1166400 Malus domestica HOM05D003622 ORTHO05D004453 1.1e-191 674.1 648 57.6
FvH4_1g02580 Fragaria vesca HOM05D003622 ORTHO05D004453 2.5e-191 672.9 669 56.7
FAN28G0611 Fragaria x ananassa HOM05D003622 ORTHO05D004453 3.2e-191 672.5 669 56.5
TWI34G1661 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 3.2e-191 672.5 653 56.5
TWI63G1810 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 4.2e-191 672.2 656 56.7
FAN19G0217 Fragaria x ananassa HOM05D003622 ORTHO05D004453 5.5e-191 671.8 669 56.5
Psat0s188g0040 Pisum sativum HOM05D003622 ORTHO05D004453 7.2e-191 671.4 652 57.7
MD02G1023300 Malus domestica HOM05D003622 ORTHO05D004453 9.4e-191 671.0 646 57.6
Cc06_g08050 Coffea canephora HOM05D003622 ORTHO05D004453 3.6e-190 669.1 658 59.1
FAN23G2517 Fragaria x ananassa HOM05D003622 ORTHO05D004453 4.7e-190 668.7 669 56.4
TWI32G0590 Tripterygium wilfordii HOM05D003622 ORTHO05D004453 1.8e-189 666.8 652 56.3
Oeu056946.1 Olea europaea HOM05D003622 ORTHO05D004453 4.4e-188 662.1 645 57.5
Hund09284 Selenicereus undatus HOM05D003622 ORTHO05D004453 2.4e-186 656.4 648 56.5
Lalb_Chr11g0072261 Lupinus albus HOM05D003622 ORTHO05D004453 5.3e-186 655.2 652 56.0
SalBow6G3081 Salvia bowleyana HOM05D003622 ORTHO05D004453 1.2e-185 654.1 657 58.6
ClCG06G011530 Citrullus lanatus HOM05D003622 ORTHO05D004453 3.5e-185 652.5 654 55.8
Sc08g0006260 Simmondsia chinensis HOM05D003622 ORTHO05D004453 5.9e-185 651.7 643 57.7
SGA_v2.0_scaffold63G21826 Striga asiatica HOM05D003622 ORTHO05D004453 7.7e-185 651.4 653 57.1
MBI13_g37002_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 2.9e-184 649.4 651 55.0
TPR.G24803 Trifolium pratense HOM05D003622 ORTHO05D004453 3.2e-183 646.0 656 56.1
AUR62013307 Chenopodium quinoa HOM05D003622 ORTHO05D004453 5.5e-183 645.2 649 54.9
Ah.09g224810 Amaranthus hybridus HOM05D003622 ORTHO05D004453 2.7e-182 642.9 652 55.5
EL10Ac8g18721 Beta vulgaris HOM05D003622 ORTHO05D004453 1.0e-181 641.0 648 55.7
Eucgr.C01387 Eucalyptus grandis HOM05D003622 ORTHO05D004453 1.8e-181 640.2 651 55.0
Oeu052762.1 Olea europaea HOM05D003622 ORTHO05D004453 5.2e-181 638.6 638 57.8
AUR62011177 Chenopodium quinoa HOM05D003622 ORTHO05D004453 6.7e-181 638.3 649 54.4
Aqoxy7G03634 Aquilegia oxysepala HOM05D003622 ORTHO05D004453 9.7e-180 634.4 651 54.4
SGA_v2.0_scaffold464G52002 Striga asiatica HOM05D003622 ORTHO05D004453 3.7e-179 632.5 641 58.5
Hund26549 Selenicereus undatus HOM05D003622 ORTHO05D004453 1.1e-178 630.9 645 54.3
PSO017G7291 Papaver somniferum HOM05D003622 ORTHO05D004453 5.3e-178 628.6 642 55.6
Lj7C432T7 Lonicera japonica HOM05D003622 ORTHO05D004453 7.7e-177 624.8 643 56.0
PSO170G2238 Papaver somniferum HOM05D003622 ORTHO05D004453 3.8e-176 622.5 641 54.9
Migut.K00423 Erythranthe guttata HOM05D003622 ORTHO05D004453 1.9e-175 620.2 642 57.5
Sed0008371 Sechium edule HOM05D003622 ORTHO05D004453 1.9e-175 620.2 648 54.5
PGR102G2297 Punica granatum HOM05D003622 ORTHO05D004453 4.4e-164 582.4 646 52.3
Migut.J01215 Erythranthe guttata HOM05D003622 ORTHO05D004453 1.8e-162 577.0 650 53.7
ECA234G4065 Erigeron canadensis HOM05D003622 ORTHO05D004453 6.1e-158 562.0 641 52.9
THA.LOC104808966 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 2.2e-155 553.5 645 50.4
HanXRQChr12g0356631 Helianthus annuus HOM05D003622 ORTHO05D004453 1.2e-153 547.7 646 51.2
Thhalv10003437m.g Eutrema salsugineum HOM05D003622 ORTHO05D004453 1.0e-152 544.7 637 49.6
CDE03G0113 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 1.7e-152 543.9 639 51.2
ATR0800G088 Amborella trichopoda HOM05D003622 ORTHO05D004453 8.6e-152 541.6 649 49.3
C04p43220 Brassica napus HOM05D003622 ORTHO05D004453 9.5e-151 538.1 643 49.0
A04p09700 Brassica napus HOM05D003622 ORTHO05D004453 2.1e-150 537.0 639 48.8
Sp7g06890 Schrenkiella parvula HOM05D003622 ORTHO05D004453 1.8e-149 533.9 639 49.5
Aa31LG9G18070 Aethionema arabicum HOM05D003622 ORTHO05D004453 2.3e-149 533.5 635 48.5
CARHR217470 Cardamine hirsuta HOM05D003622 ORTHO05D004453 1.2e-148 531.2 637 47.9
BcaB06g26937 Brassica carinata HOM05D003622 ORTHO05D004453 4.4e-148 529.3 642 48.4
Lsat_1_v5_gn_5_91841 Lactuca sativa HOM05D003622 ORTHO05D004453 1.7e-147 527.3 635 50.4
HanXRQChr10g0315861 Helianthus annuus HOM05D003622 ORTHO05D004453 4.9e-147 525.8 640 49.2
Carub.0007s3125 Capsella rubella HOM05D003622 ORTHO05D004453 1.9e-146 523.9 637 46.9
CSS0037660 Camellia sinensis var. sinensis HOM05D003622 ORTHO05D004453 7.8e-145 518.5 442 64.7
AL7G44290 Arabidopsis lyrata HOM05D003622 ORTHO05D004453 1.9e-143 513.8 638 47.0
Duzib150G0473 Durio zibethinus HOM05D003622 ORTHO05D004453 3.3e-143 513.1 652 47.5
Gohir.D13G206400 Gossypium hirsutum HOM05D003622 ORTHO05D004453 2.8e-142 510.0 655 46.3
CDE06G0586 Ceratophyllum demersum HOM05D003622 ORTHO05D004453 6.8e-141 505.4 633 49.4
BcaB02g08053 Brassica carinata HOM05D003622 ORTHO05D004453 3.4e-140 503.1 634 46.8
AT5G35430 Arabidopsis thaliana HOM05D003622 ORTHO05D004453 1.7e-139 500.7 639 46.9
unitig_0.g2718 Utricularia gibba HOM05D003622 ORTHO05D004453 9.2e-138 495.0 644 48.6
THA.LOC104826553 Tarenaya hassleriana HOM05D003622 ORTHO05D004453 1.8e-133 480.7 647 46.4
Carub.0001s0938 Capsella rubella HOM05D003622 ORTHO05D004453 1.3e-131 474.6 633 45.3
Nn2g12120 Nelumbo nucifera HOM05D003622 ORTHO05D004453 2.1e-129 467.2 470 58.5
SHI22466 Sapria himalayana HOM05D003622 ORTHO05D004453 7.8e-121 438.7 661 44.8
SEGI_29075 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.6e-116 423.7 671 40.8
Os09g0123100 Oryza sativa ssp. japonica HOM05D003622 ORTHO05D004453 1.1e-114 418.3 647 41.7
Zm00001eb308130 Zea mays HOM05D003622 ORTHO05D004453 1.8e-112 411.0 649 41.3
unitig_748.g7167 Utricularia gibba HOM05D003622 ORTHO05D004453 3.9e-112 409.8 462 51.3
Oeu055962.1 Olea europaea HOM05D003622 ORTHO05D004453 1.9e-111 407.5 588 46.4
Zm00001eb095440 Zea mays HOM05D003622 ORTHO05D004453 8.4e-107 392.1 652 39.4
BcaC02g09474 Brassica carinata HOM05D003622 ORTHO05D004453 2.4e-101 374.0 643 40.7
Mapoly0024s0101 Marchantia polymorpha HOM05D003622 ORTHO05D004453 4.9e-99 366.3 675 38.1
BcaC02g09475 Brassica carinata HOM05D003622 ORTHO05D004453 1.5e-92 344.7 394 48.2
BolC4t25899H Brassica oleracea HOM05D003622 ORTHO05D004453 4.6e-89 333.2 364 53.0
BraA04t16629Z Brassica rapa HOM05D003622 ORTHO05D004453 7.4e-87 325.9 364 52.5
Pp3c9_20660 Physcomitrium patens HOM05D003622 ORTHO05D004453 2.8e-86 323.9 639 35.2
Oeu052177.3 Olea europaea HOM05D003622 ORTHO05D004453 3.2e-82 310.5 655 37.6
Pp3c15_17690 Physcomitrium patens HOM05D003622 ORTHO05D004453 9.4e-82 308.9 637 34.9
HPP92_000465 Vanilla planifolia HOM05D003622 ORTHO05D004453 1.6e-81 308.1 369 48.5
SMO351G0297 Selaginella moellendorffii HOM05D003622 ORTHO05D004453 6.1e-81 306.2 644 37.3
CBR_g27935 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-67 259.2 694 29.7
Actinidia38718 Actinidia chinensis HOM05D003622 ORTHO05D004453 4.8e-54 216.9 563 33.2
TAR383G0647 Trochodendron aralioides HOM05D003622 ORTHO05D004453 8.0e-49 199.5 195 53.8
SEGI_39442 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 1.3e-46 192.2 344 39.5
MBI13_g36807_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 1.3e-43 182.2 118 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2256 Anthoceros agrestis HOM05D003622 ORTHO05D004453 5.0e-43 180.3 295 38.6
HPP92_000473 Vanilla planifolia HOM05D003622 ORTHO05D004453 7.0e-37 159.8 242 40.5
MBI13_g02370_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 3.7e-30 137.5 330 36.7
SEGI_04910 Sequoiadendron giganteum HOM05D003622 ORTHO05D004453 2.6e-23 114.8 149 41.6
unitig_748.g7166 Utricularia gibba HOM05D003622 ORTHO05D004453 8.6e-19 99.8 154 49.4
MBI13_g36805_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D004453 4.6e-12 77.4 138 42.8
Actinidia38717 Actinidia chinensis HOM05D003622 ORTHO05D004453 6.9e-08 63.5 75 57.3
MBI13_g36809_MAGBIO Magnolia biondii HOM05D003622 ORTHO05D240810 1.2e-07 62.8 47 53.2


User provided reference genes

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