Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014939 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.5e-49 198.4 131 100.0
CSS0035225 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.3e-30 136.7 102 92.2
Dinv43520 Davidia involucrata HOM05D000827 ORTHO05D001318 1.3e-19 100.1 103 75.7
Actinidia21589 Actinidia chinensis HOM05D005695 ORTHO05D007810 2.2e-19 99.4 102 68.6
Actinidia31732 Actinidia chinensis HOM05D000827 ORTHO05D001318 1.2e-17 93.6 102 53.9
Dinv43960 Davidia involucrata HOM05D000827 ORTHO05D001318 1.9e-15 86.3 102 70.6
vmacro13599 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 3.3e-15 85.5 102 67.6
TAR629G0081 Trochodendron aralioides HOM05D000827 ORTHO05D001318 4.3e-15 85.1 99 51.5
HanXRQChr01g0018471 Helianthus annuus HOM05D000827 ORTHO05D001318 6.3e-14 81.3 102 58.8
Nitab4.5_0006785g0040 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.1e-13 80.5 94 66.0
Nitab4.5_0000792g0150 Nicotiana tabacum HOM05D000827 ORTHO05D001318 2.4e-13 79.3 94 64.9
TAR636G2815 Trochodendron aralioides HOM05D000827 ORTHO05D001318 2.4e-13 79.3 99 47.5
CSS0035652 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.1e-13 79.0 47 72.3
CSS0045636 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.2e-12 77.0 47 70.2
Actinidia05830 Actinidia chinensis HOM05D000827 ORTHO05D001318 2.0e-12 76.3 102 49.0
Manes.09G133600 Manihot esculenta HOM05D000827 ORTHO05D001318 2.6e-12 75.9 102 46.1
Peaxi162Scf00907g00019 Petunia axillaris HOM05D000827 ORTHO05D001318 2.6e-12 75.9 43 79.1
Rhsim07G0047800 Rhododendron simsii HOM05D000827 ORTHO05D001318 1.7e-11 73.2 102 67.6
PSO017G6582 Papaver somniferum HOM05D000827 ORTHO05D001318 2.2e-11 72.8 100 50.0
PSO063G1923 Papaver somniferum HOM05D000827 ORTHO05D001318 2.2e-11 72.8 100 50.0
Rhsim11G0036900 Rhododendron simsii HOM05D000827 ORTHO05D001318 3.8e-11 72.0 102 45.1
ClCG05G002470 Citrullus lanatus HOM05D000827 ORTHO05D001318 5.0e-11 71.6 105 42.9
TWI32G0689 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 8.4e-11 70.9 100 50.0
CsaV3_3G009900 Cucumis sativus L. HOM05D000827 ORTHO05D001318 1.1e-10 70.5 107 41.1
MSTRG.20628 Avicennia marina HOM05D000827 ORTHO05D001318 1.4e-10 70.1 102 47.1
Cc08_g05790 Coffea canephora HOM05D000827 ORTHO05D001318 1.4e-10 70.1 110 44.5
QL04p053399 Quercus lobata HOM05D000827 ORTHO05D001318 1.9e-10 69.7 108 53.7
TWI34G0874 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 1.9e-10 69.7 100 40.0
AUR62015622 Chenopodium quinoa HOM05D000827 ORTHO05D001318 2.5e-10 69.3 99 46.5
Sed0016100 Sechium edule HOM05D000827 ORTHO05D001318 2.5e-10 69.3 104 41.3
Dinv37426 Davidia involucrata HOM05D000827 ORTHO05D001318 3.2e-10 68.9 102 44.1
Nitab4.5_0000030g0470 Nicotiana tabacum HOM05D000827 ORTHO05D001318 3.2e-10 68.9 43 74.4
Nitab4.5_0002244g0100 Nicotiana tabacum HOM05D000827 ORTHO05D001318 5.5e-10 68.2 43 74.4
SalBow5G5239 Salvia bowleyana HOM05D000827 ORTHO05D001318 5.5e-10 68.2 102 47.1
vmacro00092 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 9.3e-10 67.4 101 43.6
Ciclev10033040m.g Citrus clementina HOM05D000827 ORTHO05D001318 1.2e-09 67.0 101 56.4
HanXRQChr01g0025031 Helianthus annuus HOM05D000827 ORTHO05D001318 1.2e-09 67.0 47 61.7
CAN.G930.2 Capsicum annuum HOM05D000827 ORTHO05D001318 1.6e-09 66.6 106 45.3
Gohir.D11G237200 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.6e-09 66.6 43 69.8
Gorai.007G250300 Gossypium raimondii HOM05D000827 ORTHO05D001318 1.6e-09 66.6 43 69.8
Sopen08g024030 Solanum pennellii HOM05D000827 ORTHO05D001318 2.1e-09 66.2 103 54.4
PGSC0003DMG400001965 Solanum tuberosum HOM05D000827 ORTHO05D001318 2.1e-09 66.2 103 54.4
THA.LOC104820816 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 2.1e-09 66.2 101 43.6
Thecc.05G234600 Theobroma cacao HOM05D000827 ORTHO05D001318 2.1e-09 66.2 43 69.8
COL.COLO4_21419 Corchorus olitorius HOM05D000827 ORTHO05D001318 2.7e-09 65.9 109 40.4
Potri.013G070600 Populus trichocarpa HOM05D000827 ORTHO05D001318 3.5e-09 65.5 102 55.9
MELO3C006211.2 Cucumis melo HOM05D000827 ORTHO05D001318 4.6e-09 65.1 106 39.6
PGSC0003DMG400018478 Solanum tuberosum HOM05D000827 ORTHO05D001318 4.6e-09 65.1 103 43.7
Atru.chr2.1633 Acer truncatum HOM05D000827 ORTHO05D001318 6.1e-09 64.7 105 42.9
Migut.B01419 Erythranthe guttata HOM05D000827 ORTHO05D001318 6.1e-09 64.7 105 40.0
Nn1g09343 Nelumbo nucifera HOM05D000827 ORTHO05D001318 6.1e-09 64.7 101 47.5
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 6.1e-09 64.7 96 39.6
Gohir.A08G149400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 7.9e-09 64.3 40 67.5
CDE02G1634 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 1.0e-08 63.9 98 42.9
Gohir.D08G238400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.0e-08 63.9 46 65.2
Lsat_1_v5_gn_6_17261 Lactuca sativa HOM05D000827 ORTHO05D001318 1.0e-08 63.9 46 65.2
Manes.08G156400 Manihot esculenta HOM05D000827 ORTHO05D001318 1.0e-08 63.9 102 41.2
Peaxi162Scf00193g00721 Petunia axillaris HOM05D000827 ORTHO05D001318 1.0e-08 63.9 43 69.8
Cc02_g26480 Coffea canephora HOM05D000827 ORTHO05D001318 1.3e-08 63.5 41 65.9
COL.COLO4_21418 Corchorus olitorius HOM05D000827 ORTHO05D001318 1.3e-08 63.5 109 49.5
Solyc08g075400.3 Solanum lycopersicum HOM05D000827 ORTHO05D001318 1.3e-08 63.5 105 43.8
Duzib177G0432 Durio zibethinus HOM05D000827 ORTHO05D001318 1.8e-08 63.2 48 60.4
Gohir.D08G170400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.8e-08 63.2 40 65.0
Sabra13G0061500 Salix brachista HOM05D000827 ORTHO05D001318 1.8e-08 63.2 101 50.5
Sopen08g001620 Solanum pennellii HOM05D000827 ORTHO05D001318 1.8e-08 63.2 118 39.0
ECA248G2256 Erigeron canadensis HOM05D000827 ORTHO05D001318 2.3e-08 62.8 101 43.6
GSVIVG01019325001 Vitis vinifera HOM05D000827 ORTHO05D001318 2.3e-08 62.8 43 67.4
Gorai.004G177900 Gossypium raimondii HOM05D000827 ORTHO05D001318 3.0e-08 62.4 40 65.0
PGR042G3744 Punica granatum HOM05D000827 ORTHO05D001318 3.0e-08 62.4 112 47.3
Solyc08g005590.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 3.0e-08 62.4 118 39.0
MSTRG.17081 Avicennia marina HOM05D000827 ORTHO05D001318 3.9e-08 62.0 102 46.1
Cfa003700 Carpinus fangiana HOM05D000827 ORTHO05D001318 3.9e-08 62.0 115 53.0
Duzib177G0213 Durio zibethinus HOM05D000827 ORTHO05D001318 3.9e-08 62.0 48 58.3
Thhalv10021710m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 3.9e-08 62.0 46 60.9
ATR0568G208 Amborella trichopoda HOM05D000827 ORTHO05D001318 5.1e-08 61.6 99 42.4
Haze_15786 Corylus avellana HOM05D000827 ORTHO05D001318 5.1e-08 61.6 44 63.6
Gorai.004G253900 Gossypium raimondii HOM05D000827 ORTHO05D001318 5.1e-08 61.6 46 63.0
Oeu020239.1 Olea europaea HOM05D000827 ORTHO05D001318 5.1e-08 61.6 104 50.0
Cpa.g.sc73.28 Carica papaya HOM05D000827 ORTHO05D001318 6.7e-08 61.2 45 60.0
Nitab4.5_0001175g0150 Nicotiana tabacum HOM05D000827 ORTHO05D001318 6.7e-08 61.2 103 47.6
SGA_v2.0_scaffold98G29374 Striga asiatica HOM05D000827 ORTHO05D001318 6.7e-08 61.2 104 41.3
Peaxi162Scf00045g00722 Petunia axillaris HOM05D000827 ORTHO05D001318 8.7e-08 60.8 103 57.3
PGR042G0057 Punica granatum HOM05D000827 ORTHO05D001318 8.7e-08 60.8 40 67.5
Aa31LG5G14100 Aethionema arabicum HOM05D000827 ORTHO05D001318 1.1e-07 60.5 99 48.5
CDE09G0627 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 1.1e-07 60.5 41 65.9
Migut.E01374 Erythranthe guttata HOM05D000827 ORTHO05D001318 1.1e-07 60.5 43 62.8
Nitab4.5_0016158g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.1e-07 60.5 43 67.4
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 1.1e-07 60.5 104 44.2
AT3G03590 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 1.5e-07 60.1 109 47.7
Prupe.2G106900 Prunus persica HOM05D000827 ORTHO05D001318 1.5e-07 60.1 108 58.3
AL3G13360 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 1.9e-07 59.7 46 58.7
BcaC05g29864 Brassica carinata HOM05D000827 ORTHO05D001318 1.9e-07 59.7 46 60.9
C05p63300 Brassica napus HOM05D000827 ORTHO05D001318 1.9e-07 59.7 46 60.9
BolC5t34993H Brassica oleracea HOM05D000827 ORTHO05D001318 1.9e-07 59.7 46 60.9
BraA05t23111Z Brassica rapa HOM05D000827 ORTHO05D001318 1.9e-07 59.7 101 46.5
CANSAT80G2464 Cannabis sativa HOM05D000827 ORTHO05D001318 2.5e-07 59.3 93 40.9
DCAR_004528 Daucus carota HOM05D000827 ORTHO05D001318 2.5e-07 59.3 41 61.0
TAR628G1002 Trochodendron aralioides HOM05D000827 ORTHO05D001318 2.5e-07 59.3 47 55.3
Carub.0003s0275 Capsella rubella HOM05D000827 ORTHO05D001318 4.3e-07 58.5 110 43.6
Carub.0004s1729 Capsella rubella HOM05D000827 ORTHO05D001318 4.3e-07 58.5 47 59.6
CSS0043160 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 5.7e-07 58.2 103 53.4
ECA233G5913 Erigeron canadensis HOM05D000827 ORTHO05D001318 5.7e-07 58.2 46 56.5
Lj2g0023362 Lotus japonicus HOM05D000827 ORTHO05D001318 5.7e-07 58.2 41 63.4
Sp3g02570 Schrenkiella parvula HOM05D000827 ORTHO05D001318 5.7e-07 58.2 46 58.7
A05p43720 Brassica napus HOM05D000827 ORTHO05D001318 7.4e-07 57.8 108 54.6
CARHR077600 Cardamine hirsuta HOM05D000827 ORTHO05D001318 7.4e-07 57.8 104 50.0
COL.COLO4_11280 Corchorus olitorius HOM05D000827 ORTHO05D001318 7.4e-07 57.8 40 60.0
Nn1g04640 Nelumbo nucifera HOM05D000827 ORTHO05D001318 7.4e-07 57.8 49 53.1
Thecc.03G319100 Theobroma cacao HOM05D000827 ORTHO05D001318 7.4e-07 57.8 40 60.0
Ca_25044_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 9.7e-07 57.4 40 65.0
ClCG06G000610 Citrullus lanatus HOM05D000827 ORTHO05D001318 9.7e-07 57.4 102 35.3
Hma1.2p1_0680F.1_g202390 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 9.7e-07 57.4 102 40.2
Aa31LG9G15740 Aethionema arabicum HOM05D000827 ORTHO05D001318 1.3e-06 57.0 40 65.0
BcaC05g30265 Brassica carinata HOM05D000827 ORTHO05D001318 1.3e-06 57.0 120 36.7
Glyma.11G090400 Glycine max HOM05D000827 ORTHO05D001318 1.3e-06 57.0 41 63.4
RcHm_v2.0_Chr1g0340731 Rosa chinensis HOM05D000827 ORTHO05D001318 1.3e-06 57.0 108 59.3
Lalb_Chr16g0380361 Lupinus albus HOM05D000827 ORTHO05D001318 1.6e-06 56.6 50 56.0
Hund14301 Selenicereus undatus HOM05D002348 ORTHO05D002512 1.6e-06 56.6 37 64.9
THA.LOC104814391 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 1.6e-06 56.6 102 37.3
Atru.chr8.2652 Acer truncatum HOM05D000827 ORTHO05D001318 2.2e-06 56.2 43 58.1
Ah.03g146290 Amaranthus hybridus HOM05D000827 ORTHO05D001318 2.8e-06 55.8 47 51.1
AT2G35605 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 2.8e-06 55.8 41 63.4
Cfa012293 Carpinus fangiana HOM05D000827 ORTHO05D001318 2.8e-06 55.8 96 37.5
AUR62038273 Chenopodium quinoa HOM05D000827 ORTHO05D001318 2.8e-06 55.8 47 48.9
MD07G1081700 Malus domestica HOM05D000827 ORTHO05D001318 2.8e-06 55.8 100 35.0
Glyma.01G154200 Glycine max HOM05D000827 ORTHO05D001318 3.7e-06 55.5 41 61.0
Lsat_1_v5_gn_1_89320 Lactuca sativa HOM05D000827 ORTHO05D001318 3.7e-06 55.5 92 67.4
SEGI_40966 Sequoiadendron giganteum HOM05D000827 ORTHO05D001318 3.7e-06 55.5 40 60.0
GSVIVG01036871001 Vitis vinifera HOM05D000827 ORTHO05D001318 3.7e-06 55.5 99 40.4
Carub.0007s0607 Capsella rubella HOM05D000827 ORTHO05D001318 4.8e-06 55.1 47 51.1
Duzib205G1900 Durio zibethinus HOM05D000827 ORTHO05D001318 4.8e-06 55.1 102 34.3
Thhalv10017454m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 4.8e-06 55.1 102 38.2
Psat2g145520 Pisum sativum HOM05D000827 ORTHO05D001318 4.8e-06 55.1 46 52.2
Sc22g0002230 Simmondsia chinensis HOM05D000827 ORTHO05D001318 4.8e-06 55.1 94 40.4
TPR.G8987 Trifolium pratense HOM05D000827 ORTHO05D001318 4.8e-06 55.1 43 58.1
AL7G16980 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 6.3e-06 54.7 47 51.1
EL10Ac4g08090 Beta vulgaris HOM05D000827 ORTHO05D001318 6.3e-06 54.7 40 62.5
AUR62003961 Chenopodium quinoa HOM05D000827 ORTHO05D001318 6.3e-06 54.7 47 48.9
Lalb_Chr05g0215071 Lupinus albus HOM05D000827 ORTHO05D001318 6.3e-06 54.7 91 38.5
MD02G1231800 Malus domestica HOM05D000827 ORTHO05D001318 6.3e-06 54.7 103 47.6
Manes.10G072700 Manihot esculenta HOM05D000827 ORTHO05D001318 6.3e-06 54.7 43 55.8
unitig_26.g8845 Utricularia gibba HOM05D000827 ORTHO05D001318 6.3e-06 54.7 106 35.8
Aqoxy6G02793 Aquilegia oxysepala HOM05D000827 ORTHO05D001318 8.2e-06 54.3 42 57.1
Gohir.A03G184500 Gossypium hirsutum HOM05D000827 ORTHO05D001318 8.2e-06 54.3 43 53.5
Gohir.D02G206000 Gossypium hirsutum HOM05D000827 ORTHO05D001318 8.2e-06 54.3 43 53.5
unitig_0.g1359 Utricularia gibba HOM05D000827 ORTHO05D001318 8.2e-06 54.3 46 52.2


User provided reference genes

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