Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014884 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 2.8e-31 137.9 66 100.0
CSS0022648 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D002159 4.7e-18 94.0 56 85.7
vmacro13646 Vaccinium macrocarpon HOM05D000367 ORTHO05D002159 1.8e-17 92.0 56 83.9
QL04p003543 Quercus lobata HOM05D000367 ORTHO05D002159 4.0e-17 90.9 54 85.2
QL04p004749 Quercus lobata HOM05D000367 ORTHO05D002159 4.0e-17 90.9 54 85.2
COL.COLO4_23907 Corchorus olitorius HOM05D000367 ORTHO05D002159 5.2e-17 90.5 54 85.2
CANSAT21G1269 Cannabis sativa HOM05D000367 ORTHO05D002159 6.8e-17 90.1 54 85.2
CAN.G1393.19 Capsicum annuum HOM05D000367 ORTHO05D002159 8.9e-17 89.7 54 83.3
Eucgr.G03399 Eucalyptus grandis HOM05D000367 ORTHO05D002159 8.9e-17 89.7 54 85.2
QL04p004671 Quercus lobata HOM05D000367 ORTHO05D002159 8.9e-17 89.7 54 83.3
Solyc01g086740.3 Solanum lycopersicum HOM05D000367 ORTHO05D002159 8.9e-17 89.7 54 83.3
Sopen01g033740 Solanum pennellii HOM05D000367 ORTHO05D002159 8.9e-17 89.7 54 83.3
Thecc.01G414700 Theobroma cacao HOM05D000367 ORTHO05D002159 8.9e-17 89.7 54 83.3
Cc02_g27440 Coffea canephora HOM05D000367 ORTHO05D002159 1.2e-16 89.4 54 83.3
Prupe.2G007700 Prunus persica HOM05D000367 ORTHO05D002159 1.5e-16 89.0 54 85.2
Rhsim07G0053700 Rhododendron simsii HOM05D000367 ORTHO05D002159 1.5e-16 89.0 56 83.9
CiPaw.13G002000 Carya illinoinensis HOM05D000367 ORTHO05D002159 2.6e-16 88.2 54 79.6
Ciclev10031530m.g Citrus clementina HOM05D000367 ORTHO05D002159 2.6e-16 88.2 54 83.3
MD02G1316500 Malus domestica HOM05D000367 ORTHO05D002159 2.6e-16 88.2 54 83.3
Nitab4.5_0001542g0110 Nicotiana tabacum HOM05D000367 ORTHO05D002159 2.6e-16 88.2 54 81.5
Nitab4.5_0004883g0010 Nicotiana tabacum HOM05D000367 ORTHO05D002159 2.6e-16 88.2 54 81.5
PGSC0003DMG400025245 Solanum tuberosum HOM05D000367 ORTHO05D002159 2.6e-16 88.2 54 81.5
GSVIVG01032045001 Vitis vinifera HOM05D000367 ORTHO05D002159 2.6e-16 88.2 54 81.5
Peaxi162Scf00058g00314 Petunia axillaris HOM05D000367 ORTHO05D002159 3.4e-16 87.8 54 81.5
Duzib133G0442 Durio zibethinus HOM05D000367 ORTHO05D002159 4.4e-16 87.4 54 81.5
QL04p003888 Quercus lobata HOM05D000367 ORTHO05D002159 5.7e-16 87.0 54 81.5
Cfa010724 Carpinus fangiana HOM05D000367 ORTHO05D002159 7.5e-16 86.7 54 83.3
Dinv43471 Davidia involucrata HOM05D000367 ORTHO05D002159 7.5e-16 86.7 54 79.6
FvH4_7g00600 Fragaria vesca HOM05D000367 ORTHO05D002159 9.8e-16 86.3 54 81.5
FAN01G1627 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.8e-16 86.3 54 81.5
FAN01G3019 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.8e-16 86.3 54 81.5
FAN03G2518 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.8e-16 86.3 54 81.5
FAN06G1089 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.8e-16 86.3 54 81.5
FAN10G0015 Fragaria x ananassa HOM05D000367 ORTHO05D002159 9.8e-16 86.3 54 81.5
Zm00001eb269190 Zea mays HOM05D000367 ORTHO05D002159 9.8e-16 86.3 54 79.6
Gohir.A08G053500 Gossypium hirsutum HOM05D000367 ORTHO05D002159 1.3e-15 85.9 52 80.8
Gohir.D08G063000 Gossypium hirsutum HOM05D000367 ORTHO05D002159 1.3e-15 85.9 52 80.8
Gorai.004G065200 Gossypium raimondii HOM05D000367 ORTHO05D002159 1.3e-15 85.9 52 80.8
HanXRQChr17g0563481 Helianthus annuus HOM05D000367 ORTHO05D002159 1.3e-15 85.9 54 81.5
PGR031G3372 Punica granatum HOM05D000367 ORTHO05D002159 1.3e-15 85.9 54 81.5
arahy.Tifrunner.gnm1.ann1.XHNB7E Arachis hypogaea HOM05D000367 ORTHO05D002159 1.7e-15 85.5 54 79.6
Lalb_Chr20g0108121 Lupinus albus HOM05D000367 ORTHO05D002159 1.7e-15 85.5 51 78.4
RcHm_v2.0_Chr1g0314781 Rosa chinensis HOM05D000367 ORTHO05D002159 1.7e-15 85.5 54 81.5
ClCG09G003900 Citrullus lanatus HOM05D000367 ORTHO05D002159 2.2e-15 85.1 54 81.5
CsaV3_7G031320 Cucumis sativus L. HOM05D000367 ORTHO05D002159 2.2e-15 85.1 54 81.5
MSTRG.20608 Avicennia marina HOM05D000367 ORTHO05D002159 2.8e-15 84.7 56 78.6
Cpa.g.sc444.1 Carica papaya HOM05D000367 ORTHO05D002159 2.8e-15 84.7 54 79.6
Haze_03249 Corylus avellana HOM05D000367 ORTHO05D002159 2.8e-15 84.7 54 81.5
Phvul.011G214000 Phaseolus vulgaris HOM05D000367 ORTHO05D002159 3.7e-15 84.3 51 74.5
TWI53G1193 Tripterygium wilfordii HOM05D000367 ORTHO05D002159 3.7e-15 84.3 54 77.8
arahy.Tifrunner.gnm1.ann1.SY6123 Arachis hypogaea HOM05D000367 ORTHO05D002159 4.9e-15 84.0 54 77.8
Nn4g26001 Nelumbo nucifera HOM05D000367 ORTHO05D002159 6.3e-15 83.6 54 75.9
TWI73G1149 Tripterygium wilfordii HOM05D000367 ORTHO05D002159 6.3e-15 83.6 54 77.8
Glyma.08G152100 Glycine max HOM05D000367 ORTHO05D002159 8.3e-15 83.2 51 74.5
Glyma.15G271500 Glycine max HOM05D000367 ORTHO05D002159 8.3e-15 83.2 51 74.5
Lalb_Chr01g0015241 Lupinus albus HOM05D000367 ORTHO05D002159 8.3e-15 83.2 51 74.5
Phvul.005G037400 Phaseolus vulgaris HOM05D000367 ORTHO05D002159 8.3e-15 83.2 51 74.5
TAR369G0787 Trochodendron aralioides HOM05D000367 ORTHO05D002159 8.3e-15 83.2 54 81.5
Atru.chr11.2630 Acer truncatum HOM05D000367 ORTHO05D002159 1.4e-14 82.4 54 77.8
Actinidia20687 Actinidia chinensis HOM05D000367 ORTHO05D002159 1.4e-14 82.4 50 78.0
Migut.B01341 Erythranthe guttata HOM05D000367 ORTHO05D002159 1.4e-14 82.4 54 77.8
TAR623G0541 Trochodendron aralioides HOM05D000367 ORTHO05D002159 1.4e-14 82.4 54 79.6
VMungo1127G0263 Vigna mungo HOM05D000367 ORTHO05D002159 2.4e-14 81.6 55 67.3
ECA234G3345 Erigeron canadensis HOM05D000367 ORTHO05D002159 3.1e-14 81.3 54 77.8
Lsat_1_v5_gn_4_46221 Lactuca sativa HOM05D000367 ORTHO05D002159 3.1e-14 81.3 51 80.4
Lj7C567T7 Lonicera japonica HOM05D000367 ORTHO05D002159 3.1e-14 81.3 55 76.4
Manes.07G003050 Manihot esculenta HOM05D000367 ORTHO05D002159 3.1e-14 81.3 54 75.9
Hund03677 Selenicereus undatus HOM05D000367 ORTHO05D002159 3.1e-14 81.3 54 79.6
vmacro21169 Vaccinium macrocarpon HOM05D000367 ORTHO05D002159 3.1e-14 81.3 61 70.5
Aqoxy5G02082 Aquilegia oxysepala HOM05D000367 ORTHO05D002159 4.1e-14 80.9 54 75.9
DCAR_029634 Daucus carota HOM05D000367 ORTHO05D002159 4.1e-14 80.9 56 73.2
QL04p003688 Quercus lobata HOM05D000367 ORTHO05D002159 4.1e-14 80.9 44 84.1
EL10Ac3g05078 Beta vulgaris HOM05D000367 ORTHO05D002159 5.4e-14 80.5 54 75.9
Hma1.2p1_1011F.1_g247465 Hydrangea macrophylla HOM05D000367 ORTHO05D002159 5.4e-14 80.5 54 75.9
Sed0023878 Sechium edule HOM05D000367 ORTHO05D002159 7.0e-14 80.1 54 75.9
Sed0026143 Sechium edule HOM05D000367 ORTHO05D002159 7.0e-14 80.1 54 77.8
VMungo1080G1644 Vigna mungo HOM05D000367 ORTHO05D002159 7.0e-14 80.1 51 70.6
Potri.001G271300 Populus trichocarpa HOM05D000367 ORTHO05D002159 9.2e-14 79.7 52 75.0
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 1.2e-13 79.3 54 75.9
Os06g0116800 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D002159 1.2e-13 79.3 54 77.8
SGA_v2.0_scaffold4G02249 Striga asiatica HOM05D000367 ORTHO05D002159 1.2e-13 79.3 51 74.5
Glyma.12G239500 Glycine max HOM05D000367 ORTHO05D002159 1.6e-13 79.0 51 70.6
BcaC06g30829 Brassica carinata HOM05D000367 ORTHO05D002159 2.0e-13 78.6 54 72.2
A06p39400 Brassica napus HOM05D000367 ORTHO05D002159 2.0e-13 78.6 54 72.2
BolC7t44406H Brassica oleracea HOM05D000367 ORTHO05D002159 2.0e-13 78.6 54 72.2
BraA06t26855Z Brassica rapa HOM05D000367 ORTHO05D002159 2.0e-13 78.6 54 72.2
Sabra09G0048700 Salix brachista HOM05D000367 ORTHO05D002159 2.0e-13 78.6 54 74.1
Sp2g18480 Schrenkiella parvula HOM05D000367 ORTHO05D002159 2.0e-13 78.6 54 72.2
arahy.Tifrunner.gnm1.ann1.A4UTJD Arachis hypogaea HOM05D000367 ORTHO05D002159 2.7e-13 78.2 51 72.5
AUR62043121 Chenopodium quinoa HOM05D000367 ORTHO05D002159 2.7e-13 78.2 54 74.1
Psat5g198600 Pisum sativum HOM05D000367 ORTHO05D002159 2.7e-13 78.2 54 74.1
Sc14g0005160 Simmondsia chinensis HOM05D000367 ORTHO05D002159 2.7e-13 78.2 54 74.1
arahy.Tifrunner.gnm1.ann1.U3IRLW Arachis hypogaea HOM05D000367 ORTHO05D002159 3.5e-13 77.8 51 72.5
Migut.N01486 Erythranthe guttata HOM05D000367 ORTHO05D002159 3.5e-13 77.8 53 71.7
Migut.O00892 Erythranthe guttata HOM05D000367 ORTHO05D002159 3.5e-13 77.8 53 71.7
Manes.10G147900 Manihot esculenta HOM05D000367 ORTHO05D002159 3.5e-13 77.8 54 75.9
HPP92_008358 Vanilla planifolia HOM05D000367 ORTHO05D002159 3.5e-13 77.8 54 75.9
Nn3g21316 Nelumbo nucifera HOM05D000367 ORTHO05D002159 5.9e-13 77.0 53 69.8
RcHm_v2.0_Chr6g0284191 Rosa chinensis HOM05D000367 ORTHO05D002159 5.9e-13 77.0 58 70.7
C07p38870 Brassica napus HOM05D000367 ORTHO05D002159 7.8e-13 76.6 54 70.4
BcaC03g17626 Brassica carinata HOM05D000367 ORTHO05D002159 1.0e-12 76.3 51 68.6
BolC2t11681H Brassica oleracea HOM05D000367 ORTHO05D002159 1.0e-12 76.3 51 68.6
BraA02t08707Z Brassica rapa HOM05D000367 ORTHO05D002159 1.0e-12 76.3 51 68.6
CDE02G4723 Ceratophyllum demersum HOM05D000367 ORTHO05D002159 1.0e-12 76.3 54 74.1
CDE08G0747 Ceratophyllum demersum HOM05D000367 ORTHO05D002159 1.0e-12 76.3 54 74.1
Potri.009G065500 Populus trichocarpa HOM05D000367 ORTHO05D002159 1.0e-12 76.3 54 74.1
THA.LOC104826668 Tarenaya hassleriana HOM05D000367 ORTHO05D002159 1.0e-12 76.3 54 70.4
Thhalv10004199m.g Eutrema salsugineum HOM05D000367 ORTHO05D002159 1.3e-12 75.9 54 68.5
HanXRQChr04g0117371 Helianthus annuus HOM05D000367 ORTHO05D002159 1.3e-12 75.9 53 67.9
Lj3g0008595 Lotus japonicus HOM05D000367 ORTHO05D002159 1.3e-12 75.9 54 66.7
PSO384G2829 Papaver somniferum HOM05D000367 ORTHO05D002159 1.3e-12 75.9 51 74.5
Aqoxy4G02746 Aquilegia oxysepala HOM05D000367 ORTHO05D002159 1.7e-12 75.5 54 72.2
BcaB07g30000 Brassica carinata HOM05D000367 ORTHO05D002159 1.7e-12 75.5 54 68.5
Carub.0008s0758 Capsella rubella HOM05D000367 ORTHO05D002159 1.7e-12 75.5 54 68.5
Sabra16G0166700 Salix brachista HOM05D000367 ORTHO05D002159 1.7e-12 75.5 54 70.4
AL8G20290 Arabidopsis lyrata HOM05D000367 ORTHO05D002159 2.3e-12 75.1 54 68.5
AT5G48030 Arabidopsis thaliana HOM05D000367 ORTHO05D002159 2.3e-12 75.1 54 68.5
AUR62033187 Chenopodium quinoa HOM05D000367 ORTHO05D002159 2.9e-12 74.7 56 71.4
unitig_61.g26445 Utricularia gibba HOM05D000367 ORTHO05D002159 2.9e-12 74.7 54 66.7
CARHR258390 Cardamine hirsuta HOM05D000367 ORTHO05D002159 3.9e-12 74.3 54 68.5
unitig_0.g1374 Utricularia gibba HOM05D000367 ORTHO05D002159 3.9e-12 74.3 56 69.6
Glyma.09G003500 Glycine max HOM05D000367 ORTHO05D002159 5.0e-12 73.9 54 70.4
PSO541G2823 Papaver somniferum HOM05D000367 ORTHO05D002159 5.0e-12 73.9 52 73.1
PSO675G1741 Papaver somniferum HOM05D000367 ORTHO05D002159 5.0e-12 73.9 52 73.1
THA.LOC104819058 Tarenaya hassleriana HOM05D000367 ORTHO05D002159 5.0e-12 73.9 54 66.7
FAN27G3328 Fragaria x ananassa HOM05D000367 ORTHO05D002159 6.6e-12 73.6 58 67.2
Lsat_1_v5_gn_7_36181 Lactuca sativa HOM05D000367 ORTHO05D002159 6.6e-12 73.6 52 67.3
PSO339G6027 Papaver somniferum HOM05D000367 ORTHO05D002159 8.6e-12 73.2 54 68.5
TPR.G12203 Trifolium pratense HOM05D000009 ORTHO05D002159 1.1e-11 72.8 54 70.4
Cpa.g.sc27.174 Carica papaya HOM05D000367 ORTHO05D002159 1.5e-11 72.4 54 70.4
FAN15G1768 Fragaria x ananassa HOM05D000367 ORTHO05D002159 1.5e-11 72.4 58 67.2
FvH4_2g18630 Fragaria vesca HOM05D000367 ORTHO05D002159 1.9e-11 72.0 58 63.8
FAN24G2563 Fragaria x ananassa HOM05D000367 ORTHO05D002159 1.9e-11 72.0 58 63.8
Actinidia28305 Actinidia chinensis HOM05D000367 ORTHO05D002159 2.5e-11 71.6 55 65.5
Medtr4g023470 Medicago truncatula HOM05D000367 ORTHO05D002159 2.5e-11 71.6 53 64.2
Duzib138G0929 Durio zibethinus HOM05D000367 ORTHO05D002159 3.3e-11 71.2 41 80.5
Medtr3g027580 Medicago truncatula HOM05D000367 ORTHO05D002159 7.3e-11 70.1 54 70.4
SHI04061 Sapria himalayana HOM05D000367 ORTHO05D002159 7.3e-11 70.1 45 73.3
CARHR184280 Cardamine hirsuta HOM05D000367 ORTHO05D002159 1.6e-10 68.9 54 64.8
Psat7g233360 Pisum sativum HOM05D000367 ORTHO05D002159 1.6e-10 68.9 52 61.5
Lj3g0011204 Lotus japonicus HOM05D000367 ORTHO05D002159 2.1e-10 68.6 51 58.8
TPR.G9851 Trifolium pratense HOM05D000367 ORTHO05D002159 4.7e-10 67.4 52 63.5
ECA236G3999 Erigeron canadensis HOM05D000367 ORTHO05D002159 6.1e-10 67.0 52 61.5
Ca_19893_v3 Cicer arietinum L. HOM05D000367 ORTHO05D002159 2.3e-09 65.1 50 58.0
Mapoly0141s0005 Marchantia polymorpha HOM05D000367 ORTHO05D002159 5.2e-09 63.9 53 60.4
Medtr4g023490 Medicago truncatula HOM05D000367 ORTHO05D002159 6.8e-09 63.5 52 57.7
SEGI_20977 Sequoiadendron giganteum HOM05D000367 ORTHO05D002159 8.9e-09 63.2 54 63.0
ATR0810G214 Amborella trichopoda HOM05D000367 ORTHO05D002159 1.5e-08 62.4 55 67.3
ATR0620G062 Amborella trichopoda HOM05D000367 ORTHO05D002159 3.4e-08 61.2 55 63.6
Os12g0168400 Oryza sativa ssp. japonica HOM05D000367 ORTHO05D002159 1.7e-07 58.9 45 57.8
Zm00001eb407790 Zea mays HOM05D000367 ORTHO05D002159 2.9e-07 58.2 45 57.8
SMO145G0132 Selaginella moellendorffii HOM05D000367 ORTHO05D002159 4.9e-07 57.4 53 52.8
Pp3c20_8320 Physcomitrium patens HOM05D000367 ORTHO05D002159 7.0e-06 53.5 52 51.9
CBR_g51324 Chara braunii HOM05D000367 ORTHO05D002159 9.2e-06 53.1 40 60.0
Pp3c23_15370 Physcomitrium patens HOM05D000367 ORTHO05D002159 9.2e-06 53.1 52 50.0


User provided reference genes

Program Settings