Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.8e-149 530.4 331 100.0
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.4e-147 525.8 331 99.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.8e-109 398.3 329 70.2
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.2e-107 392.1 331 66.5
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.1e-102 375.6 332 73.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.1e-102 375.6 334 62.9
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.2e-101 374.0 383 57.2
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.9e-99 366.7 331 64.0
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.3e-97 360.5 332 60.8
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.4e-96 354.8 326 62.3
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 6.3e-95 351.7 339 69.9
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 3.2e-91 339.3 332 61.4
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 2.5e-88 329.7 330 60.6
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.8e-87 326.2 332 59.0
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.6e-85 319.7 330 54.2
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 7.7e-85 318.2 330 60.3
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.3e-84 317.4 328 53.7
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.1e-83 314.3 326 54.9
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.4e-83 313.9 332 53.0
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.9e-83 313.5 331 54.1
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.5e-83 313.2 331 55.3
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.2e-83 312.8 330 56.7
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 4.2e-83 312.4 330 53.6
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 4.2e-83 312.4 332 57.8
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.6e-82 310.5 332 57.5
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.1e-82 310.1 330 56.1
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.0e-81 307.8 332 52.7
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.4e-81 307.4 332 57.8
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.8e-81 307.0 333 60.1
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 6.7e-81 305.1 332 59.9
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 8.8e-81 304.7 331 53.8
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-80 304.3 324 52.8
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 2.6e-80 303.1 331 51.4
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.6e-80 303.1 332 56.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.3e-79 300.8 324 52.2
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.3e-79 300.8 324 52.2
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.7e-79 300.4 332 54.8
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.7e-79 300.4 332 59.9
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 3.7e-79 299.3 332 54.5
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.0e-77 293.5 333 53.2
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 2.2e-76 290.0 326 53.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.2e-76 290.0 338 50.3
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.2e-76 290.0 339 55.8
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 8.5e-76 288.1 329 51.7
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.1e-75 287.7 333 55.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.9e-75 287.0 332 49.7
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 7.2e-75 285.0 332 52.4
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 7.2e-75 285.0 331 56.2
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 9.4e-75 284.6 332 54.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.2e-74 284.3 332 49.4
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.6e-74 283.9 333 55.3
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 2.7e-74 283.1 331 51.4
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 3.6e-74 282.7 331 51.4
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 4.0e-73 279.3 392 43.6
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 5.2e-73 278.9 332 55.7
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.3e-72 276.2 392 45.7
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 5.7e-72 275.4 329 52.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 5.7e-72 275.4 389 54.2
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-71 273.9 338 54.7
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 4.8e-71 272.3 337 53.7
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 4.8e-71 272.3 332 56.3
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.4e-70 270.8 331 47.1
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.8e-70 270.4 320 54.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.4e-70 270.0 327 54.7
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.5e-69 265.8 403 46.7
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 4.5e-69 265.8 334 51.8
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 2.9e-68 263.1 318 48.4
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 5.0e-68 262.3 331 50.5
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.2e-67 259.2 332 52.7
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.2e-67 259.2 332 52.7
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 9.4e-67 258.1 331 45.0
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.6e-66 257.3 332 50.9
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 6.1e-66 255.4 331 46.2
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 8.0e-66 255.0 326 58.6
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-65 254.2 332 52.1
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.3e-65 253.4 340 50.6
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.2e-63 246.9 305 53.4
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.7e-63 246.1 286 55.9
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.1e-62 243.0 332 50.0
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.2e-61 241.1 332 54.2
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.2e-61 241.1 325 46.8
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.2e-61 241.1 331 52.6
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.5e-61 239.6 330 46.4
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 3.5e-61 239.6 331 45.6
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 6.5e-60 235.3 263 62.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.1e-59 234.6 351 45.9
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.5e-59 234.2 323 49.8
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.9e-59 233.8 268 51.5
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 9.5e-59 231.5 329 48.6
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.2e-58 231.1 389 48.6
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 5.2e-57 225.7 332 42.8
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.2e-56 224.6 332 46.7
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.4e-56 223.0 262 60.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 4.4e-56 222.6 307 45.6
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.2e-55 220.3 321 43.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 3.5e-53 213.0 250 50.8
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 4.5e-53 212.6 369 39.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.7e-53 211.8 323 42.4
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.7e-52 210.7 317 47.0
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.3e-52 210.3 328 46.0
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.9e-52 209.9 334 45.2
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.3e-51 206.5 317 43.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 3.3e-51 206.5 317 41.0
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 9.5e-51 204.9 188 68.6
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 9.5e-51 204.9 328 46.6
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 9.5e-51 204.9 336 38.4
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.2e-50 204.5 327 47.7
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.2e-50 204.5 332 41.3
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 6.1e-50 202.2 362 38.1
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 6.8e-49 198.7 380 36.3
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.7e-47 194.1 332 47.0
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 3.7e-47 193.0 332 46.7
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.1e-46 191.4 275 40.0
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 7.0e-46 188.7 295 39.3
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 4.6e-45 186.0 333 45.6
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 5.9e-45 185.7 296 37.5
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.3e-44 183.7 310 42.3
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.1e-43 181.4 365 38.4
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.9e-43 180.6 362 43.4
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 9.5e-43 178.3 184 56.5
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.6e-42 177.6 307 46.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.6e-42 177.6 311 38.9
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 6.8e-41 172.2 306 36.6
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 8.9e-41 171.8 307 42.3
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 8.9e-41 171.8 306 45.1
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 7.5e-40 168.7 250 45.6
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 3.7e-39 166.4 304 38.2
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.1e-38 164.9 302 41.4
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 7.8e-37 158.7 302 40.7
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 2.3e-36 157.1 179 47.5
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.5e-35 154.5 322 37.9
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.9e-35 154.1 262 50.8
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 4.3e-35 152.9 331 35.3
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 4.3e-35 152.9 331 35.3
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.6e-34 151.0 184 51.6
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-33 147.1 304 38.8
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 2.3e-33 147.1 210 40.0
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.3e-33 147.1 182 48.9
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.5e-32 144.4 332 36.7
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 5.8e-32 142.5 308 38.3
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 8.3e-31 138.7 156 50.0
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.9e-30 137.5 168 52.4
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.9e-30 137.5 168 52.4
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 7.8e-29 132.1 146 54.1
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 3.3e-27 126.7 160 45.6
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 2.1e-26 124.0 298 35.2
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.3e-25 120.6 152 46.1
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.2e-24 118.2 248 37.5
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.6e-24 117.1 387 27.1
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 5.8e-24 115.9 331 32.9
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.2e-21 108.2 105 61.0
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-21 108.2 135 51.9
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 3.5e-21 106.7 188 44.1
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.6e-21 106.3 393 28.0
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-20 104.4 136 51.5
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.3e-20 104.0 156 42.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 4.3e-19 99.8 198 34.3
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-18 97.4 122 46.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.5e-16 91.3 84 58.3
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 9.9e-16 88.6 147 40.8
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.2e-14 83.6 194 34.5
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.0e-13 79.3 99 41.4
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.9e-11 74.3 225 28.0
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.3e-11 73.2 140 44.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.4e-09 67.4 246 26.4
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.5e-08 64.7 198 27.8
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-08 64.7 95 45.3
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-08 64.7 60 53.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.0e-08 64.3 80 41.2
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.7e-07 61.2 103 47.6
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.9e-07 60.5 84 40.5
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 8.4e-07 58.9 122 32.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 8.4e-07 58.9 122 32.8
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 7.1e-06 55.8 218 26.1
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 7.1e-06 55.8 218 26.1


User provided reference genes

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