Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 3.2e-57 224.9 120 100.0
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 9.3e-57 223.4 120 99.2
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 6.9e-44 180.6 121 79.3
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 2.2e-42 175.6 121 77.7
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 8.5e-42 173.7 116 77.6
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 3.2e-41 171.8 121 76.9
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 5.5e-41 171.0 118 74.6
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 1.2e-40 169.9 120 75.0
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.7e-40 168.7 122 74.6
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 6.1e-40 167.5 121 77.7
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 6.1e-40 167.5 118 72.9
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 7.9e-40 167.2 118 72.9
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 1.4e-39 166.4 123 71.5
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 1.4e-39 166.4 121 73.6
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.4e-39 166.4 120 75.8
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 1.8e-39 166.0 118 71.2
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 3.9e-39 164.9 118 70.3
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 6.7e-39 164.1 120 74.2
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 1.1e-38 163.3 118 72.9
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.5e-38 162.9 118 75.4
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 2.6e-38 162.2 114 71.1
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 2.6e-38 162.2 114 71.1
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 3.3e-38 161.8 117 72.6
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 7.4e-38 160.6 121 74.4
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 9.7e-38 160.2 121 71.9
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 9.7e-38 160.2 122 71.3
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.7e-37 159.5 114 71.1
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 8.2e-37 157.1 121 69.4
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 2.4e-36 155.6 121 69.4
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 3.1e-36 155.2 119 72.3
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 4.1e-36 154.8 112 73.2
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 9.1e-36 153.7 119 68.9
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 1.2e-35 153.3 114 72.8
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 1.2e-35 153.3 124 66.9
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.5e-35 152.9 122 65.6
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 4.5e-35 151.4 117 68.4
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 4.5e-35 151.4 123 69.9
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 4.5e-35 151.4 118 70.3
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 5.9e-35 151.0 113 71.7
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 7.7e-35 150.6 121 66.9
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 1.0e-34 150.2 116 73.3
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 1.7e-34 149.4 128 66.4
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 1.7e-34 149.4 128 66.4
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 1.7e-34 149.4 128 66.4
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 1.7e-34 149.4 128 66.4
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 2.2e-34 149.1 127 65.4
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 2.2e-34 149.1 120 65.8
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 3.8e-34 148.3 116 69.8
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 3.8e-34 148.3 120 65.8
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 5.0e-34 147.9 128 67.2
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 5.0e-34 147.9 128 67.2
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 5.0e-34 147.9 118 68.6
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 5.0e-34 147.9 116 69.8
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 5.0e-34 147.9 116 70.7
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.5e-34 147.5 122 63.9
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 6.5e-34 147.5 122 63.9
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 6.5e-34 147.5 122 63.9
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 8.5e-34 147.1 124 64.5
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 1.9e-33 146.0 127 64.6
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.5e-33 145.6 116 69.8
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.5e-33 145.6 116 69.8
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 2.5e-33 145.6 116 69.8
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 3.2e-33 145.2 107 73.8
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 5.5e-33 144.4 116 69.0
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 5.5e-33 144.4 121 64.5
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 7.2e-33 144.1 122 63.1
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 7.2e-33 144.1 122 64.8
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 7.2e-33 144.1 122 64.8
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 7.2e-33 144.1 122 65.6
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 7.2e-33 144.1 122 65.6
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 9.4e-33 143.7 116 64.7
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 9.4e-33 143.7 122 64.8
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.2e-32 143.3 115 69.6
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 1.6e-32 142.9 117 64.1
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 4.7e-32 141.4 119 64.7
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 6.1e-32 141.0 120 66.7
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 1.8e-31 139.4 99 73.7
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 2.3e-31 139.0 121 64.5
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 3.0e-31 138.7 121 63.6
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 3.0e-31 138.7 122 63.1
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 5.2e-31 137.9 97 78.4
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 6.7e-31 137.5 101 73.3
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 1.1e-30 136.7 119 63.0
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 5.7e-30 134.4 100 72.0
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 1.3e-29 133.3 101 70.3
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 2.2e-29 132.5 101 70.3
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 2.8e-29 132.1 125 60.8
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 4.8e-29 131.3 121 60.3
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 4.8e-29 131.3 109 64.2
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 4.8e-29 131.3 125 60.8
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 6.3e-29 131.0 97 71.1
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 6.3e-29 131.0 98 72.4
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 4.1e-28 128.3 93 73.1
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 5.3e-28 127.9 123 58.5
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 2.0e-27 125.9 119 59.7
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 3.5e-27 125.2 92 71.7
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 1.3e-26 123.2 118 56.8
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 2.2e-26 122.5 123 59.3
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 2.9e-26 122.1 99 67.7
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 5.0e-26 121.3 93 68.8
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 6.5e-26 120.9 99 66.7
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.2e-25 118.6 113 56.6
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 7.2e-25 117.5 116 56.0
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 4.7e-24 114.8 97 63.9
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 4.7e-24 114.8 97 63.9
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 5.2e-23 111.3 121 51.2
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 1.5e-22 109.8 113 55.8
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 3.3e-22 108.6 108 53.7
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 9.7e-22 107.1 117 50.4
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 2.2e-21 105.9 115 59.1
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 2.4e-20 102.4 115 51.3
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 9.1e-20 100.5 93 58.1
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 1.3e-18 96.7 82 67.1
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.1e-17 93.6 110 49.1
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 3.2e-17 92.0 126 47.6
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 5.5e-17 91.3 126 49.2
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 3.6e-16 88.6 88 61.4
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 3.5e-11 72.0 117 41.0
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 3.3e-09 65.5 52 69.2
A05p13650 Brassica napus HOM05D003064 ORTHO05D001733 4.0e-07 58.5 99 35.4
BraA05t20303Z Brassica rapa HOM05D003064 ORTHO05D001733 4.0e-07 58.5 99 35.4
PGR102G0542 Punica granatum HOM05D003064 ORTHO05D001733 4.0e-07 58.5 63 54.0
MSTRG.18858 Avicennia marina HOM05D003064 ORTHO05D001733 5.2e-07 58.2 63 47.6
Glyma.08G158500 Glycine max HOM05D003064 ORTHO05D001733 5.2e-07 58.2 57 49.1
BcaB02g10426 Brassica carinata HOM05D003064 ORTHO05D001733 6.8e-07 57.8 99 35.4
Migut.N00578 Erythranthe guttata HOM05D003064 ORTHO05D001733 6.8e-07 57.8 65 40.0
Lj3g0018900 Lotus japonicus HOM05D003064 ORTHO05D001733 6.8e-07 57.8 57 49.1
SEGI_26321 Sequoiadendron giganteum HOM05D047374 ORTHO05D008206 6.8e-07 57.8 115 36.5
MD11G1012700 Malus domestica HOM05D003064 ORTHO05D001733 8.9e-07 57.4 80 40.0
Prupe.6G010800 Prunus persica HOM05D003064 ORTHO05D001733 8.9e-07 57.4 80 41.2
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 1.2e-06 57.0 63 44.4
Thhalv10017436m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 1.2e-06 57.0 104 32.7
Lalb_Chr25g0283731 Lupinus albus HOM05D003064 ORTHO05D001733 1.2e-06 57.0 57 47.4
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 1.5e-06 56.6 57 45.6
AL4G27240 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 2.0e-06 56.2 105 33.3
AL80U10020 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 2.0e-06 56.2 105 33.3
AT2G31940 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 2.0e-06 56.2 105 33.3
MD03G1010900 Malus domestica HOM05D003064 ORTHO05D001733 2.0e-06 56.2 80 40.0
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 2.0e-06 56.2 57 52.6
BcaC02g11300 Brassica carinata HOM05D003064 ORTHO05D001733 2.6e-06 55.8 99 34.3
C04p17820 Brassica napus HOM05D003064 ORTHO05D001733 2.6e-06 55.8 99 34.3
BolC4t23330H Brassica oleracea HOM05D003064 ORTHO05D001733 2.6e-06 55.8 99 34.3
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 2.6e-06 55.8 57 47.4
Cc01_g01060 Coffea canephora HOM05D003064 ORTHO05D001733 3.4e-06 55.5 105 41.0
Cfa009621 Carpinus fangiana HOM05D003064 ORTHO05D001733 4.4e-06 55.1 80 43.8
Phvul.005G042500 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 5.7e-06 54.7 58 48.3
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 5.7e-06 54.7 57 49.1
Glyma.15G267900 Glycine max HOM05D003064 ORTHO05D001733 7.5e-06 54.3 58 48.3
RcHm_v2.0_Chr5g0081381 Rosa chinensis HOM05D003064 ORTHO05D001733 7.5e-06 54.3 80 41.2
TAR633G2572 Trochodendron aralioides HOM05D003064 ORTHO05D001733 7.5e-06 54.3 92 40.2
arahy.Tifrunner.gnm1.ann1.0YUQ4V Arachis hypogaea HOM05D003064 ORTHO05D001733 9.8e-06 53.9 80 41.2
arahy.Tifrunner.gnm1.ann1.MW6VFJ Arachis hypogaea HOM05D003064 ORTHO05D001733 9.8e-06 53.9 80 41.2


User provided reference genes

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