Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014849 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 4.2e-107 391.3 196 100.0
CSS0009897 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 6.2e-58 228.0 196 66.8
CSS0048751 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 5.2e-57 224.9 196 66.8
CSS0040121 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 3.4e-56 222.2 196 66.3
CSS0013095 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 1.9e-38 163.3 174 59.8
CSS0015629 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 5.3e-25 118.6 90 71.1
Actinidia17791 Actinidia chinensis HOM05D007327 ORTHO05D009342 6.5e-23 111.7 90 65.6
Dinv25868 Davidia involucrata HOM05D007327 ORTHO05D009342 1.0e-20 104.4 91 63.7
COL.COLO4_08563 Corchorus olitorius HOM05D007327 ORTHO05D009342 6.7e-20 101.7 91 60.4
Oeu051268.1 Olea europaea HOM05D007327 ORTHO05D009342 1.1e-19 100.9 89 62.9
RcHm_v2.0_Chr6g0275381 Rosa chinensis HOM05D007327 ORTHO05D009342 2.5e-19 99.8 144 43.8
Thecc.08G153100 Theobroma cacao HOM05D007327 ORTHO05D009342 2.5e-19 99.8 88 59.1
HanXRQChr04g0108941 Helianthus annuus HOM05D007327 ORTHO05D009342 3.3e-19 99.4 98 58.2
ECA247G1449 Erigeron canadensis HOM05D007327 ORTHO05D009342 4.3e-19 99.0 98 55.1
QL02p039069 Quercus lobata HOM05D007327 ORTHO05D009342 5.7e-19 98.6 91 56.0
Eucgr.F04237 Eucalyptus grandis HOM05D007327 ORTHO05D009342 9.7e-19 97.8 89 60.7
Gohir.A01G103900 Gossypium hirsutum HOM05D007327 ORTHO05D009342 9.7e-19 97.8 88 60.2
Gohir.D01G089200 Gossypium hirsutum HOM05D007327 ORTHO05D009342 9.7e-19 97.8 88 60.2
Gorai.002G114900 Gossypium raimondii HOM05D007327 ORTHO05D009342 9.7e-19 97.8 88 60.2
GSVIVG01034535001 Vitis vinifera HOM05D007327 ORTHO05D009342 9.7e-19 97.8 98 57.1
Duzib093G0512 Durio zibethinus HOM05D007327 ORTHO05D009342 1.6e-18 97.1 91 58.2
Phvul.004G094900 Phaseolus vulgaris HOM05D007327 ORTHO05D009342 2.2e-18 96.7 89 57.3
Prupe.8G031100 Prunus persica HOM05D007327 ORTHO05D009342 2.8e-18 96.3 88 58.0
TAR628G0726 Trochodendron aralioides HOM05D007327 ORTHO05D009342 4.8e-18 95.5 90 57.8
FvH4_2g13700 Fragaria vesca HOM05D007327 ORTHO05D009342 6.3e-18 95.1 144 43.1
Glyma.16G166900 Glycine max HOM05D007327 ORTHO05D009342 8.2e-18 94.7 89 56.2
Glyma.02G081500 Glycine max HOM05D007327 ORTHO05D009342 1.1e-17 94.4 89 56.2
Manes.18G092400 Manihot esculenta HOM05D007327 ORTHO05D009342 1.1e-17 94.4 91 57.1
Sed0007638 Sechium edule HOM05D007327 ORTHO05D009342 1.1e-17 94.4 91 58.2
MD05G1026600 Malus domestica HOM05D007327 ORTHO05D009342 1.4e-17 94.0 88 55.7
Psat1g101680 Pisum sativum HOM05D007327 ORTHO05D009342 1.4e-17 94.0 144 42.4
FAN24G0347 Fragaria x ananassa HOM05D007327 ORTHO05D009342 1.8e-17 93.6 164 38.4
Sabra02G0053500 Salix brachista HOM05D007327 ORTHO05D009342 2.4e-17 93.2 88 55.7
Atru.chr13.2102 Acer truncatum HOM05D007327 ORTHO05D009342 4.1e-17 92.4 91 56.0
Cfa018321 Carpinus fangiana HOM05D007327 ORTHO05D009342 4.1e-17 92.4 87 57.5
Haze_17755 Corylus avellana HOM05D007327 ORTHO05D009342 4.1e-17 92.4 87 57.5
Lsat_1_v5_gn_1_6021 Lactuca sativa HOM05D007327 ORTHO05D009342 5.3e-17 92.0 142 44.4
Peaxi162Scf00599g00511 Petunia axillaris HOM05D007327 ORTHO05D009342 5.3e-17 92.0 91 57.1
TWI60G1090 Tripterygium wilfordii HOM05D007327 ORTHO05D009342 5.3e-17 92.0 87 56.3
Lj2g0012645 Lotus japonicus HOM05D007327 ORTHO05D009342 6.9e-17 91.7 89 55.1
PSO541G6301 Papaver somniferum HOM05D007327 ORTHO05D009342 6.9e-17 91.7 95 54.7
PSO675G1203 Papaver somniferum HOM05D007327 ORTHO05D009342 6.9e-17 91.7 95 54.7
Cc00_g31580 Coffea canephora HOM05D007327 ORTHO05D009342 9.0e-17 91.3 90 53.3
Cc10_g14850 Coffea canephora HOM05D007327 ORTHO05D009342 9.0e-17 91.3 90 53.3
FAN15G0044 Fragaria x ananassa HOM05D007327 ORTHO05D009342 9.0e-17 91.3 144 41.0
Hma1.2p1_0105F.1_g050650 Hydrangea macrophylla HOM05D007327 ORTHO05D009342 9.0e-17 91.3 90 53.3
Potri.002G067900 Populus trichocarpa HOM05D007327 ORTHO05D009342 9.0e-17 91.3 64 67.2
PGR044G2476 Punica granatum HOM05D007327 ORTHO05D009342 9.0e-17 91.3 89 56.2
PGR080G0004 Punica granatum HOM05D007327 ORTHO05D009342 9.0e-17 91.3 89 56.2
PGR100G0004 Punica granatum HOM05D007327 ORTHO05D009342 9.0e-17 91.3 89 56.2
Ciclev10001558m.g Citrus clementina HOM05D007327 ORTHO05D009342 1.2e-16 90.9 53 81.1
MELO3C029831.2 Cucumis melo HOM05D007327 ORTHO05D009342 1.2e-16 90.9 88 56.8
Lalb_Chr19g0130241 Lupinus albus HOM05D007327 ORTHO05D009342 1.2e-16 90.9 97 55.7
TPR.G31184 Trifolium pratense HOM05D007327 ORTHO05D009342 1.2e-16 90.9 89 52.8
Ca_25918_v3 Cicer arietinum L. HOM05D007327 ORTHO05D009342 1.5e-16 90.5 144 38.9
arahy.Tifrunner.gnm1.ann1.LUB646 Arachis hypogaea HOM05D007327 ORTHO05D009342 2.0e-16 90.1 89 53.9
arahy.Tifrunner.gnm1.ann1.S2I56E Arachis hypogaea HOM05D007327 ORTHO05D009342 2.0e-16 90.1 89 53.9
ClCG08G007070 Citrullus lanatus HOM05D007327 ORTHO05D009342 2.0e-16 90.1 89 55.1
CsaV3_6G005130 Cucumis sativus L. HOM05D007327 ORTHO05D009342 2.6e-16 89.7 88 55.7
Medtr6g036750 Medicago truncatula HOM05D007327 ORTHO05D009342 2.6e-16 89.7 89 52.8
Cpa.g.c33136.2 Carica papaya HOM05D007327 ORTHO05D009342 7.7e-16 88.2 87 55.2
CiPaw.15G016000 Carya illinoinensis HOM05D007327 ORTHO05D009342 1.0e-15 87.8 87 55.2
Nitab4.5_0002452g0030 Nicotiana tabacum HOM05D007327 ORTHO05D009342 3.8e-15 85.9 88 54.5
Nn5g28751 Nelumbo nucifera HOM05D007327 ORTHO05D009342 5.0e-15 85.5 90 52.2
DCAR_010093 Daucus carota HOM05D007327 ORTHO05D009342 8.5e-15 84.7 91 53.8
Migut.C00996 Erythranthe guttata HOM05D007327 ORTHO05D009342 1.1e-14 84.3 90 51.1
SGA_v2.0_scaffold24G10336 Striga asiatica HOM05D007327 ORTHO05D009342 3.2e-14 82.8 53 75.5
CANSAT25G1895 Cannabis sativa HOM05D007327 ORTHO05D009342 4.2e-14 82.4 62 62.9
Solyc04g071470.3 Solanum lycopersicum HOM05D007327 ORTHO05D009342 7.2e-14 81.6 53 75.5
Sopen04g027430 Solanum pennellii HOM05D007327 ORTHO05D009342 7.2e-14 81.6 53 75.5
Zm00001eb146700 Zea mays HOM05D007327 ORTHO05D009342 1.2e-13 80.9 53 73.6
Aqoxy6G00379 Aquilegia oxysepala HOM05D007327 ORTHO05D009342 1.6e-13 80.5 88 52.3
SalBow7G2928 Salvia bowleyana HOM05D007327 ORTHO05D009342 2.1e-13 80.1 165 38.2
Hund26695 Selenicereus undatus HOM05D007327 ORTHO05D009342 2.1e-13 80.1 88 52.3
HPP92_000065 Vanilla planifolia HOM05D007327 ORTHO05D009342 3.6e-13 79.3 91 49.5
Os01g0867200 Oryza sativa ssp. japonica HOM05D007327 ORTHO05D009342 7.9e-13 78.2 53 67.9
ATR0582G033 Amborella trichopoda HOM05D007327 ORTHO05D009342 1.0e-12 77.8 90 47.8
unitig_26.g9897 Utricularia gibba HOM05D007327 ORTHO05D009342 1.7e-10 70.5 53 64.2
SEGI_20996 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 2.0e-08 63.5 91 41.8
SMO335G0004 Selaginella moellendorffii HOM05D007327 ORTHO05D009342 1.9e-06 57.0 54 53.7


User provided reference genes

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