Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014819 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 7.3e-77 290.4 141 100.0
CSS0042330 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.1e-55 219.2 128 85.2
CSS0016803 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 7.6e-34 147.5 124 62.1
CSS0011408 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.3e-29 131.7 109 63.3
Dinv17490 Davidia involucrata HOM05D000051 ORTHO05D000015 2.3e-22 109.4 136 44.1
Dinv17488 Davidia involucrata HOM05D000051 ORTHO05D000015 6.7e-22 107.8 135 48.9
Lj2A948G37 Lonicera japonica HOM05D000051 ORTHO05D000015 2.0e-21 106.3 136 43.4
Dinv17485 Davidia involucrata HOM05D000051 ORTHO05D000015 9.7e-21 104.0 136 45.6
Dinv17489 Davidia involucrata HOM05D000051 ORTHO05D000015 2.8e-20 102.4 136 42.6
Dinv21722 Davidia involucrata HOM05D000051 ORTHO05D000015 1.7e-17 93.2 126 44.4
Dinv17487 Davidia involucrata HOM05D000051 ORTHO05D000015 6.5e-17 91.3 133 42.9
vmacro17042 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.7e-15 85.9 134 37.3
Rhsim13G0198300 Rhododendron simsii HOM05D000051 ORTHO05D000015 2.3e-14 82.8 140 38.6
Dinv20164 Davidia involucrata HOM05D000051 ORTHO05D000015 1.5e-13 80.1 130 40.0
vmacro14310 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.3e-12 77.0 138 37.7
Ciclev10013738m.g Citrus clementina HOM05D000051 ORTHO05D000015 1.7e-12 76.6 129 37.2
Rhsim01G0199100 Rhododendron simsii HOM05D000051 ORTHO05D000015 2.8e-12 75.9 135 38.5
Ciclev10018327m.g Citrus clementina HOM05D000051 ORTHO05D000015 1.1e-11 73.9 143 30.8
AUR62020677 Chenopodium quinoa HOM05D000051 ORTHO05D000015 4.1e-11 72.0 103 38.8
DCAR_017364 Daucus carota HOM05D000051 ORTHO05D000015 4.1e-11 72.0 135 34.1
Rhsim01G0199000 Rhododendron simsii HOM05D000051 ORTHO05D000015 4.1e-11 72.0 149 37.6
CSS0037667 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 5.3e-11 71.6 137 35.8
Dinv42542 Davidia involucrata HOM05D000051 ORTHO05D000015 7.0e-11 71.2 139 33.8
Sc13g0005650 Simmondsia chinensis HOM05D000051 ORTHO05D000015 7.0e-11 71.2 108 37.0
Carub.0006s2039 Capsella rubella HOM05D000051 ORTHO05D000015 9.1e-11 70.9 121 35.5
Dinv20165 Davidia involucrata HOM05D000051 ORTHO05D000015 9.1e-11 70.9 106 39.6
Cc05_g13410 Coffea canephora HOM05D000051 ORTHO05D000015 1.6e-10 70.1 115 40.0
vmacro11759 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.6e-10 69.3 119 34.5
AUR62028057 Chenopodium quinoa HOM05D000051 ORTHO05D000015 4.5e-10 68.6 114 33.3
Lj2A948T36 Lonicera japonica HOM05D000051 ORTHO05D000015 4.5e-10 68.6 70 50.0
Carub.0006s2043 Capsella rubella HOM05D000051 ORTHO05D000015 5.9e-10 68.2 116 35.3
Dinv21724 Davidia involucrata HOM05D000051 ORTHO05D000015 5.9e-10 68.2 97 40.2
COL.COLO4_35728 Corchorus olitorius HOM05D000051 ORTHO05D000015 7.7e-10 67.8 112 40.2
Cc01_g01400 Coffea canephora HOM05D000051 ORTHO05D000015 1.3e-09 67.0 109 38.5
COL.COLO4_00389 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.3e-09 67.0 124 33.1
AUR62020687 Chenopodium quinoa HOM05D000051 ORTHO05D000015 2.9e-09 65.9 103 39.8
Thecc.04G151900 Theobroma cacao HOM05D000051 ORTHO05D000015 3.8e-09 65.5 108 39.8
AL6G33690 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 5.0e-09 65.1 118 33.9
AUR62020678 Chenopodium quinoa HOM05D000051 ORTHO05D000015 5.0e-09 65.1 128 32.0
Cc01_g01520 Coffea canephora HOM05D000051 ORTHO05D000015 6.5e-09 64.7 120 37.5
CSS0000789 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 8.5e-09 64.3 132 34.1
Cc01_g12550 Coffea canephora HOM05D000051 ORTHO05D000015 8.5e-09 64.3 109 39.4
COL.COLO4_35721 Corchorus olitorius HOM05D000051 ORTHO05D000015 8.5e-09 64.3 106 39.6
FvH4_3g33401 Fragaria vesca HOM05D012937 ORTHO05D000015 8.5e-09 64.3 118 33.9
AT5G22670 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 1.1e-08 63.9 120 35.0
COL.COLO4_16364 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.1e-08 63.9 117 36.8
CARHR263690 Cardamine hirsuta HOM05D000051 ORTHO05D000015 1.5e-08 63.5 116 35.3
Ciclev10015203m.g Citrus clementina HOM05D000051 ORTHO05D000015 1.5e-08 63.5 106 34.9
RcHm_v2.0_Chr5g0028551 Rosa chinensis HOM05D000051 ORTHO05D000015 1.5e-08 63.5 137 32.8
SGA_v2.0_scaffold9G04956 Striga asiatica HOM05D000051 ORTHO05D000015 1.5e-08 63.5 93 35.5
Ah.08g209330 Amaranthus hybridus HOM05D000051 ORTHO05D000015 1.9e-08 63.2 124 34.7
COL.COLO4_18268 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.9e-08 63.2 108 33.3
Duzib268G1144 Durio zibethinus HOM05D000051 ORTHO05D000015 1.9e-08 63.2 125 36.0
Lj1A868G40 Lonicera japonica HOM05D000051 ORTHO05D000015 1.9e-08 63.2 100 41.0
vmacro11746 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.9e-08 63.2 102 40.2
COL.COLO4_16363 Corchorus olitorius HOM05D000051 ORTHO05D000015 3.2e-08 62.4 132 34.8
Actinidia15955 Actinidia chinensis HOM05D000051 ORTHO05D000015 4.2e-08 62.0 136 34.6
Cc01_g01510 Coffea canephora HOM05D000051 ORTHO05D000015 4.2e-08 62.0 111 41.4
QL08p012292 Quercus lobata HOM05D000051 ORTHO05D000015 4.2e-08 62.0 122 32.8
Ciclev10013052m.g Citrus clementina HOM05D000051 ORTHO05D000015 5.5e-08 61.6 131 32.8
Lj1A868T32 Lonicera japonica HOM05D000051 ORTHO05D000015 5.5e-08 61.6 129 34.9
CSS0033794 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 7.2e-08 61.2 119 37.0
AUR62020685 Chenopodium quinoa HOM05D000051 ORTHO05D000015 9.4e-08 60.8 96 36.5
AUR62028061 Chenopodium quinoa HOM05D000051 ORTHO05D000015 9.4e-08 60.8 99 33.3
AUR62044538 Chenopodium quinoa HOM05D000051 ORTHO05D000015 9.4e-08 60.8 99 33.3
Actinidia18763 Actinidia chinensis HOM05D000051 ORTHO05D000015 1.2e-07 60.5 124 36.3
C03p12470 Brassica napus HOM05D000051 ORTHO05D000015 1.2e-07 60.5 128 32.0
AUR62037009 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.2e-07 60.5 118 31.4
Ciclev10011664m.g Citrus clementina HOM05D000051 ORTHO05D000015 1.2e-07 60.5 100 34.0
COL.COLO4_16357 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.2e-07 60.5 109 34.9
Migut.M00820 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.2e-07 60.5 103 35.0
Potri.011G121400 Populus trichocarpa HOM05D000051 ORTHO05D000015 1.2e-07 60.5 101 36.6
AUR62020676 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.6e-07 60.1 113 31.0
FvH4_2g37070 Fragaria vesca HOM05D000051 ORTHO05D000015 1.6e-07 60.1 106 36.8
FAN18G0789 Fragaria x ananassa HOM05D012937 ORTHO05D000015 1.6e-07 60.1 120 32.5
HanXRQChr17g0564791 Helianthus annuus HOM05D000051 ORTHO05D000015 1.6e-07 60.1 121 31.4
HanXRQChr17g0564801 Helianthus annuus HOM05D000051 ORTHO05D000015 1.6e-07 60.1 115 32.2
Lj3g0027587 Lotus japonicus HOM05D000051 ORTHO05D000015 1.6e-07 60.1 99 35.4
Gohir.A13G140200 Gossypium hirsutum HOM05D000051 ORTHO05D000015 2.1e-07 59.7 116 35.3
Gorai.013G162700 Gossypium raimondii HOM05D000051 ORTHO05D000015 2.1e-07 59.7 116 35.3
QL05p025648 Quercus lobata HOM05D000051 ORTHO05D000015 2.1e-07 59.7 112 33.9
Rhsim06G0215100 Rhododendron simsii HOM05D000051 ORTHO05D000015 2.1e-07 59.7 102 39.2
TPR.G6877 Trifolium pratense HOM05D000051 ORTHO05D000015 2.1e-07 59.7 96 38.5
CSS0002318 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.7e-07 59.3 109 37.6
CSS0008598 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.7e-07 59.3 107 38.3
CARHR190910 Cardamine hirsuta HOM05D000051 ORTHO05D000015 2.7e-07 59.3 114 34.2
FAN10G3451 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.6e-07 58.9 118 33.1
Lj1g0006189 Lotus japonicus HOM05D000051 ORTHO05D000015 3.6e-07 58.9 98 35.7
Lj3g0014741 Lotus japonicus HOM05D000051 ORTHO05D000015 3.6e-07 58.9 109 33.9
RcHm_v2.0_Chr5g0069771 Rosa chinensis HOM05D000051 ORTHO05D000015 3.6e-07 58.9 101 37.6
BraA03t10391Z Brassica rapa HOM05D000051 ORTHO05D000015 4.7e-07 58.5 118 33.9
Cc08_g00360 Coffea canephora HOM05D000051 ORTHO05D000015 6.1e-07 58.2 117 35.0
FvH4_3g17080 Fragaria vesca HOM05D000051 ORTHO05D000015 6.1e-07 58.2 106 34.9
Lj8A145G72 Lonicera japonica HOM05D000051 ORTHO05D000015 6.1e-07 58.2 109 34.9
MD03G1255400 Malus domestica HOM05D000051 ORTHO05D000015 6.1e-07 58.2 127 35.4
MD11G1265300 Malus domestica HOM05D000051 ORTHO05D000015 6.1e-07 58.2 125 32.8
TPR.G6826 Trifolium pratense HOM05D000051 ORTHO05D000015 6.1e-07 58.2 96 33.3
C03p12450 Brassica napus HOM05D000051 ORTHO05D000015 8.0e-07 57.8 118 34.7
BolC3t13716H Brassica oleracea HOM05D000051 ORTHO05D000015 8.0e-07 57.8 118 32.2
AUR62028049 Chenopodium quinoa HOM05D000051 ORTHO05D000015 8.0e-07 57.8 97 36.1
Migut.N01904 Erythranthe guttata HOM05D000051 ORTHO05D000015 8.0e-07 57.8 116 32.8
FAN13G1655 Fragaria x ananassa HOM05D012937 ORTHO05D000015 8.0e-07 57.8 120 31.7
Actinidia05113 Actinidia chinensis HOM05D000051 ORTHO05D000015 1.0e-06 57.4 100 34.0
CSS0042719 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.0e-06 57.4 105 41.0
CSS0042786 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.0e-06 57.4 105 41.0
FvH4_1g06320 Fragaria vesca HOM05D000051 ORTHO05D000015 1.0e-06 57.4 77 36.4
FAN10G1889 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.0e-06 57.4 132 32.6
Rhsim04G0020200 Rhododendron simsii HOM05D000051 ORTHO05D000015 1.0e-06 57.4 121 37.2
vmacro11751 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.0e-06 57.4 111 37.8
EL10Ac8g18742 Beta vulgaris HOM05D000051 ORTHO05D000015 1.4e-06 57.0 126 30.2
C05p15250 Brassica napus HOM05D000051 ORTHO05D000015 1.4e-06 57.0 108 32.4
Eucgr.E04098 Eucalyptus grandis HOM05D000051 ORTHO05D000015 1.4e-06 57.0 99 37.4
Actinidia09921 Actinidia chinensis HOM05D000051 ORTHO05D000015 1.8e-06 56.6 114 34.2
Ah.04g165630 Amaranthus hybridus HOM05D000051 ORTHO05D000015 1.8e-06 56.6 100 36.0
BolC3t13717H Brassica oleracea HOM05D000051 ORTHO05D000015 1.8e-06 56.6 105 28.6
CSS0019187 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.8e-06 56.6 109 36.7
AUR62028038 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.8e-06 56.6 108 36.1
Thhalv10013648m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 1.8e-06 56.6 114 28.1
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 1.8e-06 56.6 78 39.7
Sc13g0005430 Simmondsia chinensis HOM05D000051 ORTHO05D000015 1.8e-06 56.6 101 33.7
Sc24g0001550 Simmondsia chinensis HOM05D000051 ORTHO05D000015 1.8e-06 56.6 123 34.1
vmacro11747 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.8e-06 56.6 50 56.0
AT1G16930 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 2.3e-06 56.2 118 30.5
AUR62020682 Chenopodium quinoa HOM05D000051 ORTHO05D000015 2.3e-06 56.2 110 33.6
Lj1A869T76 Lonicera japonica HOM05D000051 ORTHO05D000015 2.3e-06 56.2 102 36.3
RcHm_v2.0_Chr5g0060771 Rosa chinensis HOM05D000051 ORTHO05D000015 2.3e-06 56.2 79 41.8
vmacro11750 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.3e-06 56.2 131 34.4
AL6G33720 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 3.0e-06 55.8 114 31.6
Migut.M00206 Erythranthe guttata HOM05D000051 ORTHO05D000015 3.0e-06 55.8 116 37.9
Migut.M00821 Erythranthe guttata HOM05D000051 ORTHO05D000015 3.0e-06 55.8 114 30.7
Gohir.D01G064900 Gossypium hirsutum HOM05D000051 ORTHO05D000015 3.0e-06 55.8 102 38.2
RcHm_v2.0_Chr5g0028401 Rosa chinensis HOM05D000051 ORTHO05D000015 3.0e-06 55.8 109 36.7
Dinv18861 Davidia involucrata HOM05D000051 ORTHO05D000015 4.0e-06 55.5 126 32.5
Migut.M00817 Erythranthe guttata HOM05D000051 ORTHO05D000015 4.0e-06 55.5 94 37.2
FvH4_3g32940 Fragaria vesca HOM05D000051 ORTHO05D000015 4.0e-06 55.5 129 34.1
MD11G1275400 Malus domestica HOM05D000051 ORTHO05D000015 4.0e-06 55.5 103 34.0
RhsimUnG0031600 Rhododendron simsii HOM05D000051 ORTHO05D000015 4.0e-06 55.5 119 37.0
A03p10850 Brassica napus HOM05D000051 ORTHO05D000015 5.2e-06 55.1 105 27.6
A06p12850 Brassica napus HOM05D000051 ORTHO05D000015 5.2e-06 55.1 108 33.3
BraA03t10393Z Brassica rapa HOM05D000051 ORTHO05D000015 5.2e-06 55.1 118 32.2
BraA03t10395Z Brassica rapa HOM05D000051 ORTHO05D000015 5.2e-06 55.1 105 28.6
BraA06t24445Z Brassica rapa HOM05D000051 ORTHO05D000015 5.2e-06 55.1 108 33.3
CARHR180680 Cardamine hirsuta HOM05D000051 ORTHO05D000015 5.2e-06 55.1 132 31.1
COL.COLO4_10539 Corchorus olitorius HOM05D000689 ORTHO05D000015 5.2e-06 55.1 86 36.0
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 5.2e-06 55.1 100 35.0
Gohir.A09G213658 Gossypium hirsutum HOM05D030405 ORTHO05D000015 5.2e-06 55.1 124 31.5
HanXRQChr01g0005001 Helianthus annuus HOM05D000051 ORTHO05D000015 5.2e-06 55.1 107 34.6
Lj1g0006484 Lotus japonicus HOM05D000051 ORTHO05D000015 5.2e-06 55.1 97 30.9
QL05p025652 Quercus lobata HOM05D000051 ORTHO05D011342 5.2e-06 55.1 108 34.3
RcHm_v2.0_Chr5g0059961 Rosa chinensis HOM05D000051 ORTHO05D000015 5.2e-06 55.1 93 34.4
Sc13g0005510 Simmondsia chinensis HOM05D000051 ORTHO05D000015 5.2e-06 55.1 114 29.8
Migut.M00541 Erythranthe guttata HOM05D000051 ORTHO05D000015 6.7e-06 54.7 115 36.5
FAN25G3081 Fragaria x ananassa HOM05D000051 ORTHO05D000015 6.7e-06 54.7 116 32.8
Prupe.4G183700 Prunus persica HOM05D000051 ORTHO05D000015 6.7e-06 54.7 90 36.7
QL08p012268 Quercus lobata HOM05D000051 ORTHO05D000015 6.7e-06 54.7 122 32.0
Sc13g0005570 Simmondsia chinensis HOM05D000051 ORTHO05D000015 6.7e-06 54.7 111 32.4
Actinidia35253 Actinidia chinensis HOM05D000051 ORTHO05D000015 8.8e-06 54.3 119 33.6
C05p15180 Brassica napus HOM05D000051 ORTHO05D000015 8.8e-06 54.3 118 29.7
Migut.M00832 Erythranthe guttata HOM05D000051 ORTHO05D000015 8.8e-06 54.3 123 30.1
Gorai.002G086000 Gossypium raimondii HOM05D000051 ORTHO05D000015 8.8e-06 54.3 102 37.3
HanXRQChr01g0026711 Helianthus annuus HOM05D000051 ORTHO05D000015 8.8e-06 54.3 123 32.5
QL08p020617 Quercus lobata HOM05D000051 ORTHO05D000015 8.8e-06 54.3 123 34.1


User provided reference genes

Program Settings