Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014816 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 1.8e-230 802.4 440 100.0
CSS0039023 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 3.4e-229 798.1 440 99.3
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 6.9e-190 667.5 438 82.0
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 4.1e-86 322.8 448 48.0
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 1.3e-74 284.6 464 44.2
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 1.3e-71 274.6 424 45.8
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 4.8e-50 203.0 446 37.0
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 4.6e-45 186.4 309 43.4
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 1.0e-39 168.7 460 31.7
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.1e-33 147.1 301 39.5
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 2.0e-24 117.9 245 36.3
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 4.2e-22 110.2 478 28.7
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 2.7e-21 107.5 465 28.8
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 1.4e-20 105.1 531 26.7
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 2.2e-18 97.8 453 26.7
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 2.2e-18 97.8 491 26.5
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 2.8e-18 97.4 375 27.5
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 6.3e-18 96.3 577 25.3
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 7.0e-17 92.8 439 28.7
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 2.0e-16 91.3 437 27.2
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 3.5e-16 90.5 459 25.5
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 2.2e-15 87.8 486 26.3
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 3.8e-15 87.0 568 24.8
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 5.0e-15 86.7 397 28.0
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 7.2e-14 82.8 269 32.0
Cpa.g.sc28.161 Carica papaya HOM05D006920 ORTHO05D005895 2.1e-13 81.3 227 32.6
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 2.1e-13 81.3 377 26.8
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 2.7e-13 80.9 409 26.4
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 1.4e-12 78.6 189 37.0
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 5.2e-12 76.6 452 25.9
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 8.8e-12 75.9 110 42.7
Dinv42333 Davidia involucrata HOM05D006920 ORTHO05D005895 6.3e-10 69.7 57 61.4
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 8.3e-10 69.3 452 25.7
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 3.1e-09 67.4 424 25.7
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 1.6e-08 65.1 231 29.4
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 2.0e-08 64.7 317 24.6
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 4.5e-08 63.5 447 24.2
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 1.0e-07 62.4 392 24.5
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.7e-07 61.6 88 50.0
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 2.9e-07 60.8 495 23.4
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 2.9e-07 60.8 506 24.3
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 3.8e-07 60.5 321 24.6
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 6.5e-07 59.7 363 24.8
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.2e-06 57.4 472 23.3
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.2e-06 57.4 474 24.3
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 4.2e-06 57.0 445 24.0
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 5.5e-06 56.6 326 27.0


User provided reference genes

Program Settings