Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014814 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.8e-96 354.0 178 100.0
CSS0003239 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 7.5e-95 350.5 178 98.9
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 2.5e-58 229.2 155 74.2
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 5.8e-55 218.0 155 74.2
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 7.1e-53 211.1 189 62.4
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 2.7e-52 209.1 186 62.9
Actinidia35520 Actinidia chinensis HOM05D001340 ORTHO05D005342 1.5e-50 203.4 152 71.1
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 5.6e-50 201.4 152 68.4
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 7.9e-44 181.0 153 64.7
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 2.3e-43 179.5 153 61.4
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 8.7e-43 177.6 190 53.7
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 3.3e-42 175.6 152 62.5
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 9.6e-42 174.1 147 62.6
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 4.8e-41 171.8 158 62.0
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 4.8e-41 171.8 152 58.6
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 2.4e-40 169.5 152 61.8
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 2.4e-40 169.5 151 61.6
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 2.4e-40 169.5 153 60.8
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 5.3e-40 168.3 150 61.3
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 5.3e-40 168.3 152 59.9
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 1.2e-39 167.2 181 54.7
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 1.5e-39 166.8 144 64.6
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 1.5e-39 166.8 162 55.6
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 2.6e-39 166.0 152 60.5
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 2.6e-39 166.0 151 57.0
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 4.5e-39 165.2 155 58.1
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 1.0e-38 164.1 112 75.9
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 2.2e-38 162.9 152 57.2
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 2.2e-38 162.9 154 55.2
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 2.9e-38 162.5 147 61.9
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 6.5e-38 161.4 153 59.5
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 1.1e-37 160.6 145 60.0
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 1.4e-37 160.2 162 52.5
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 5.5e-37 158.3 163 52.8
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 7.1e-37 157.9 157 54.1
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 7.1e-37 157.9 152 59.2
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 9.3e-37 157.5 152 54.6
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 1.2e-36 157.1 155 57.4
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 2.1e-36 156.4 159 54.7
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 2.7e-36 156.0 143 56.6
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 3.5e-36 155.6 183 47.5
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 3.5e-36 155.6 152 56.6
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 1.8e-35 153.3 143 57.3
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 3.9e-35 152.1 148 56.8
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 6.7e-35 151.4 152 55.9
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.1e-34 150.6 153 55.6
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.5e-34 150.2 152 53.3
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 3.3e-34 149.1 142 57.0
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 4.3e-34 148.7 154 55.2
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 9.7e-34 147.5 147 55.8
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 1.3e-33 147.1 187 48.7
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.7e-33 145.6 142 55.6
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 3.7e-33 145.6 152 53.9
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 6.3e-33 144.8 154 54.5
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 8.2e-33 144.4 152 54.6
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 3.1e-32 142.5 152 53.3
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 3.1e-32 142.5 161 50.9
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 4.1e-32 142.1 150 55.3
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 5.3e-32 141.7 161 50.9
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 6.9e-32 141.4 157 52.2
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 6.9e-32 141.4 139 56.8
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.2e-31 140.6 152 53.3
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 3.4e-31 139.0 157 52.2
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 5.9e-31 138.3 140 56.4
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 5.9e-31 138.3 106 67.0
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 7.6e-31 137.9 157 51.0
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.3e-30 137.1 137 55.5
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.3e-30 137.1 141 54.6
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 1.7e-30 136.7 153 49.7
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 1.7e-30 136.7 142 54.9
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 5.0e-30 135.2 153 52.9
Sabra05G0021300 Salix brachista HOM05D001340 ORTHO05D005342 6.5e-30 134.8 155 52.9
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.1e-29 134.0 154 51.3
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 1.1e-29 134.0 140 55.0
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 5.5e-29 131.7 176 47.2
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 5.5e-29 131.7 176 47.2
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 7.2e-29 131.3 153 50.3
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 2.1e-28 129.8 153 52.3
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 7.9e-28 127.9 117 59.8
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 1.3e-27 127.1 132 53.0
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 2.3e-27 126.3 158 50.0
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 5.1e-27 125.2 163 45.4
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 6.7e-27 124.8 165 47.3
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 4.3e-26 122.1 138 50.7
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.7e-26 121.7 132 50.0
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 7.4e-26 121.3 132 50.8
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 4.8e-25 118.6 153 47.1
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 4.8e-25 118.6 153 47.1
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 6.3e-25 118.2 157 47.1
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 8.2e-25 117.9 142 45.8
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 8.2e-25 117.9 140 51.4
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 9.1e-24 114.4 151 48.3
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 1.2e-23 114.0 130 52.3
arahy.Tifrunner.gnm1.ann1.6LPS1E Arachis hypogaea HOM05D001340 ORTHO05D005342 1.5e-23 113.6 158 46.8
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 2.0e-23 113.2 154 44.8
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.0e-23 113.2 101 58.4
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 4.5e-23 112.1 134 52.2
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 1.0e-22 110.9 139 49.6
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 3.8e-22 109.0 152 46.7
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 2.5e-21 106.3 107 58.9
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 4.2e-21 105.5 140 45.7
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 9.4e-21 104.4 80 67.5
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 1.0e-19 100.9 75 70.7
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 3.9e-19 99.0 107 57.0
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 2.0e-18 96.7 105 54.3
Sabra01G0113700 Salix brachista HOM05D001340 ORTHO05D005342 4.4e-18 95.5 111 51.4
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 9.7e-18 94.4 73 65.8
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 2.2e-17 93.2 106 56.6
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 1.8e-16 90.1 143 37.8
BcaC06g31772 Brassica carinata HOM05D001340 ORTHO05D005342 1.2e-15 87.4 128 43.8
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 1.2e-15 87.4 61 67.2
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 2.6e-15 86.3 58 69.0
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 3.4e-15 85.9 136 43.4
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 4.5e-15 85.5 86 52.3
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 4.5e-15 85.5 80 53.8
Sabra05G0010300 Salix brachista HOM05D001340 ORTHO05D005342 7.7e-15 84.7 112 47.3
PSO675G7546 Papaver somniferum HOM05D001340 ORTHO05D005342 1.7e-14 83.6 51 78.4
SEGI_40234 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 2.9e-14 82.8 99 49.5
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 8.5e-14 81.3 184 33.7
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 1.1e-13 80.9 130 40.0
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 7.2e-13 78.2 65 58.5
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 9.4e-13 77.8 55 63.6
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 9.4e-13 77.8 70 55.7
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 2.7e-12 76.3 225 28.9
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 4.7e-12 75.5 55 61.8
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.0e-10 70.1 49 71.4
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 5.7e-10 68.6 138 39.9
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.7e-09 65.9 49 69.4
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 8.2e-09 64.7 156 30.8
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 3.1e-08 62.8 55 52.7
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 1.2e-07 60.8 49 65.3
Hund23305 Selenicereus undatus HOM05D001340 ORTHO05D011069 3.5e-07 59.3 47 66.0
AUR62020541 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.7e-06 57.0 49 59.2
AUR62020511 Chenopodium quinoa HOM05D001340 ORTHO05D011069 2.2e-06 56.6 50 56.0
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 6.5e-06 55.1 33 78.8
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 8.5e-06 54.7 68 47.1


User provided reference genes

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