Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 8.0e-129 463.8 234 100.0
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.4e-87 325.5 225 76.9
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.0e-83 313.9 232 71.6
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.1e-81 306.2 220 74.5
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 4.8e-81 305.1 220 73.6
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 6.9e-80 301.2 218 72.0
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.3e-78 297.0 225 71.1
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 3.8e-78 295.4 234 67.9
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 3.8e-78 295.4 234 69.7
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 6.4e-78 294.7 221 70.6
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.4e-77 293.5 224 70.5
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.9e-77 293.1 222 68.5
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 2.1e-76 289.7 225 67.1
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 7.9e-76 287.7 216 69.4
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 6.7e-75 284.6 213 73.2
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.5e-74 282.7 232 65.9
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.5e-74 282.7 220 69.1
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 2.5e-74 282.7 239 62.3
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 2.5e-74 282.7 226 65.5
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 3.3e-74 282.3 206 72.8
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 4.3e-74 282.0 227 65.6
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 9.6e-74 280.8 220 66.8
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.3e-73 280.4 228 66.2
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.3e-73 280.4 224 65.2
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 3.6e-73 278.9 228 66.2
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 4.8e-73 278.5 224 71.0
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.4e-72 276.9 220 65.5
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.8e-72 276.6 220 67.3
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 3.1e-72 275.8 233 63.9
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 3.1e-72 275.8 226 65.0
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 5.3e-72 275.0 228 64.9
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 5.3e-72 275.0 223 64.6
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 2.0e-71 273.1 227 66.5
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.0e-71 273.1 224 67.4
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.0e-71 273.1 255 60.0
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 2.6e-71 272.7 218 65.1
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 4.5e-71 271.9 219 66.2
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 7.6e-71 271.2 225 64.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.3e-70 270.4 216 69.0
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.3e-70 270.4 243 62.6
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.7e-70 270.0 227 65.2
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 2.9e-70 269.2 237 62.4
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.8e-70 268.9 238 63.9
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 8.4e-70 267.7 226 63.7
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.4e-69 266.9 151 84.8
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.4e-69 266.9 219 65.3
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.9e-69 266.5 219 65.8
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 2.4e-69 266.2 241 62.2
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.4e-69 266.2 230 63.0
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.4e-69 266.2 226 62.4
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.1e-68 263.1 220 64.5
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 2.1e-68 263.1 239 63.2
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 2.7e-68 262.7 225 61.3
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.7e-68 262.7 225 61.3
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.9e-68 261.2 224 60.3
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 7.9e-68 261.2 227 61.2
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 7.9e-68 261.2 225 60.0
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 7.9e-68 261.2 232 62.9
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.3e-67 260.4 258 57.8
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.8e-67 260.0 224 63.4
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.3e-67 259.6 227 61.2
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 2.3e-67 259.6 227 61.2
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.0e-67 259.2 222 59.9
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 3.0e-67 259.2 149 83.2
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.5e-66 256.9 227 60.4
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.9e-66 256.5 254 59.4
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.3e-66 255.8 225 59.1
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 7.4e-66 254.6 217 62.7
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 7.4e-66 254.6 214 60.7
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 9.6e-66 254.2 236 58.9
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 4.8e-65 251.9 236 58.5
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 4.8e-65 251.9 228 61.8
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 8.1e-65 251.1 218 64.2
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 5.3e-64 248.4 225 65.3
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 6.9e-64 248.1 214 61.7
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 9.0e-64 247.7 238 60.5
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 3.4e-63 245.7 221 59.7
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.4e-63 245.7 220 58.2
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.8e-62 242.3 201 62.2
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.9e-62 241.9 213 62.9
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.4e-62 241.1 217 59.4
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 8.4e-62 241.1 211 59.2
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 8.4e-62 241.1 218 57.8
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 8.4e-62 241.1 211 62.6
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.1e-61 240.7 242 56.2
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.1e-61 240.7 267 52.4
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 1.1e-61 240.7 232 59.5
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.9e-61 240.0 207 61.8
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.5e-61 239.6 204 62.3
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 7.1e-61 238.0 222 57.7
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 9.3e-61 237.7 286 52.1
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 6.0e-60 235.0 204 61.3
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 6.0e-60 235.0 204 61.3
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.1e-59 231.9 223 56.5
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 8.7e-59 231.1 161 69.6
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 8.7e-59 231.1 208 63.9
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.1e-58 230.7 161 69.6
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 7.4e-58 228.0 234 55.1
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.3e-57 227.3 216 59.7
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.7e-57 225.7 211 57.3
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 6.3e-57 224.9 199 61.3
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 3.1e-56 222.6 193 61.1
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.0e-54 217.6 150 71.3
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 1.0e-54 217.6 132 77.3
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.5e-53 211.8 235 51.5
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.6e-52 210.3 122 89.3
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 4.3e-50 202.2 208 57.2
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 5.7e-50 201.8 146 68.5
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.4e-48 196.4 187 61.0
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.5e-47 192.2 150 67.3
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 5.5e-45 185.3 137 64.2
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 7.2e-45 184.9 177 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 2.6e-42 176.4 137 61.3
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 7.4e-42 174.9 186 54.8
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.3e-41 174.1 185 55.1
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 4.8e-41 172.2 121 68.6
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 1.7e-38 163.7 134 58.2
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 2.2e-38 163.3 160 53.1
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.1e-37 161.0 191 46.6
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.7e-33 147.1 97 75.3
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.8e-33 146.4 96 76.0
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.4e-32 143.3 139 54.7
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 7.7e-31 138.3 80 77.5
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 3.5e-23 112.8 53 90.6
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 4.2e-21 105.9 124 49.2
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 9.4e-21 104.8 54 92.6
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 2.6e-18 96.7 72 66.7
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 7.5e-18 95.1 103 50.5
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.7e-17 94.0 135 38.5
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 4.7e-12 75.9 225 31.1
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.3e-09 67.8 133 30.8
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.3e-09 67.8 36 83.3


User provided reference genes

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