Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014793 Camellia sinensis var. sinensis HOM05D007929 ORTHO05D008690 4.4e-52 207.6 99 100.0
Actinidia05192 Actinidia chinensis HOM05D007929 ORTHO05D008690 3.7e-27 124.8 98 63.3
Rhsim07G0105500 Rhododendron simsii HOM05D007929 ORTHO05D008690 7.0e-26 120.6 91 64.8
Dinv21608 Davidia involucrata HOM05D007929 ORTHO05D008690 6.6e-24 114.0 95 58.9
Dinv39112 Davidia involucrata HOM05D007929 ORTHO05D008690 8.6e-24 113.6 88 68.2
Actinidia27458 Actinidia chinensis HOM05D007929 ORTHO05D008690 1.6e-22 109.4 88 62.5
Lj2A212T45 Lonicera japonica HOM05D007929 ORTHO05D008690 1.3e-19 99.8 94 52.1
QL12p013187 Quercus lobata HOM05D007929 ORTHO05D008690 1.6e-17 92.8 83 59.0
Nn1g01073 Nelumbo nucifera HOM05D007929 ORTHO05D008690 2.0e-17 92.4 87 51.7
Manes.01G077200 Manihot esculenta HOM05D007929 ORTHO05D008690 1.3e-16 89.7 78 51.3
GSVIVG01004789001 Vitis vinifera HOM05D007929 ORTHO05D008690 6.6e-16 87.4 96 49.0
Potri.001G121200 Populus trichocarpa HOM05D007929 ORTHO05D008690 8.6e-16 87.0 79 55.7
TAR374G1634 Trochodendron aralioides HOM05D007929 ORTHO05D008690 8.6e-16 87.0 88 51.1
CiPaw.12G107500 Carya illinoinensis HOM05D007929 ORTHO05D008690 1.5e-15 86.3 82 54.9
Potri.003G112000 Populus trichocarpa HOM05D007929 ORTHO05D008690 1.5e-15 86.3 75 56.0
Nn6g34027 Nelumbo nucifera HOM05D007929 ORTHO05D008690 2.5e-15 85.5 83 50.6
vmacro14098 Vaccinium macrocarpon HOM05D007929 ORTHO05D008690 2.5e-15 85.5 92 45.7
CsaV3_5G004010 Cucumis sativus L. HOM05D007929 ORTHO05D008690 5.6e-15 84.3 79 54.4
Ciclev10019204m.g Citrus clementina HOM05D007929 ORTHO05D008690 7.3e-15 84.0 89 51.7
MELO3C005557.2 Cucumis melo HOM05D007929 ORTHO05D008690 9.5e-15 83.6 98 45.9
Duzib084G1023 Durio zibethinus HOM05D007929 ORTHO05D008690 1.1e-13 80.1 62 62.9
Cfa021312 Carpinus fangiana HOM05D007929 ORTHO05D008690 1.4e-13 79.7 82 50.0
Manes.02G036501 Manihot esculenta HOM05D007929 ORTHO05D008690 2.3e-13 79.0 94 42.6
Sabra01G0093400 Salix brachista HOM05D007929 ORTHO05D008690 2.3e-13 79.0 74 52.7
Thecc.03G256000 Theobroma cacao HOM05D007929 ORTHO05D008690 2.3e-13 79.0 62 62.9
Prupe.5G074300 Prunus persica HOM05D007929 ORTHO05D008690 8.9e-13 77.0 76 52.6
ClCG01G003880 Citrullus lanatus HOM05D007929 ORTHO05D008690 3.4e-12 75.1 94 42.6
Duzib205G1039 Durio zibethinus HOM05D007929 ORTHO05D008690 3.4e-12 75.1 62 59.7
RcHm_v2.0_Chr7g0202661 Rosa chinensis HOM05D007929 ORTHO05D008690 9.9e-12 73.6 75 50.7
TWI60G0818 Tripterygium wilfordii HOM05D007929 ORTHO05D008690 9.9e-12 73.6 82 45.1
TAR375G1016 Trochodendron aralioides HOM05D007929 ORTHO05D008690 9.9e-12 73.6 88 46.6
Gohir.A12G219000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 3.7e-11 71.6 62 56.5
Gorai.008G237100 Gossypium raimondii HOM05D007929 ORTHO05D008690 3.7e-11 71.6 62 56.5
Gohir.A08G171000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 6.4e-11 70.9 58 58.6
Eucgr.E00452 Eucalyptus grandis HOM05D007929 ORTHO05D008690 1.4e-10 69.7 64 50.0
Gohir.D08G189300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 1.4e-10 69.7 58 58.6
Gorai.004G199400 Gossypium raimondii HOM05D007929 ORTHO05D008690 1.9e-10 69.3 57 59.6
FvH4_5g00200 Fragaria vesca HOM05D007929 ORTHO05D008690 4.1e-10 68.2 86 41.9
Sed0000260 Sechium edule HOM05D007929 ORTHO05D008690 4.1e-10 68.2 79 46.8
COL.COLO4_37202 Corchorus olitorius HOM05D007929 ORTHO05D008690 5.4e-10 67.8 62 54.8
Nitab4.5_0009716g0010 Nicotiana tabacum HOM05D007929 ORTHO05D008690 5.4e-10 67.8 83 43.4
FAN08G2103 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.2e-09 66.6 86 40.7
FAN18G3609 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.2e-09 66.6 86 40.7
MD06G1062900 Malus domestica HOM05D007929 ORTHO05D008690 1.2e-09 66.6 48 60.4
Duzib068G0525 Durio zibethinus HOM05D007929 ORTHO05D008690 2.1e-09 65.9 53 62.3
Nitab4.5_0000993g0050 Nicotiana tabacum HOM05D007929 ORTHO05D008690 2.1e-09 65.9 83 42.2
MD04G1085400 Malus domestica HOM05D007929 ORTHO05D008690 6.0e-09 64.3 61 50.8
Hund14599 Selenicereus undatus HOM05D007929 ORTHO05D008690 7.8e-09 63.9 54 55.6
Nn3g17370 Nelumbo nucifera HOM05D001536 ORTHO05D001442 1.7e-08 62.8 91 41.8
ATR0111G010 Amborella trichopoda HOM05D001536 ORTHO05D001442 3.0e-08 62.0 90 44.4
MBI04_g37591_MAGBIO Magnolia biondii HOM05D007929 ORTHO05D008690 3.0e-08 62.0 94 38.3
FAN13G1817 Fragaria x ananassa HOM05D007929 ORTHO05D008690 3.9e-08 61.6 91 37.4
Sabra03G0077700 Salix brachista HOM05D007929 ORTHO05D008690 5.1e-08 61.2 75 44.0
Peaxi162Scf00002g00920 Petunia axillaris HOM05D007929 ORTHO05D008690 8.6e-08 60.5 78 42.3
MBI19_g16681_MAGBIO Magnolia biondii HOM05D001536 ORTHO05D001442 1.1e-07 60.1 73 43.8
CAN.G1217.13 Capsicum annuum HOM05D007929 ORTHO05D008690 1.5e-07 59.7 90 38.9
EL10Ac6g14955 Beta vulgaris HOM05D001536 ORTHO05D001442 5.6e-07 57.8 89 37.1
CDE07G1318 Ceratophyllum demersum HOM05D001536 ORTHO05D001442 7.3e-07 57.4 49 57.1
Nn4g23320 Nelumbo nucifera HOM05D001536 ORTHO05D001442 7.3e-07 57.4 56 55.4
Lalb_Chr05g0220121 Lupinus albus HOM05D001536 ORTHO05D001442 1.2e-06 56.6 69 44.9
Sc22g0000740 Simmondsia chinensis HOM05D007929 ORTHO05D008690 1.2e-06 56.6 55 50.9
PGSC0003DMG401028385 Solanum tuberosum HOM05D001536 ORTHO05D001442 1.2e-06 56.6 61 50.8
CDE12G0643 Ceratophyllum demersum HOM05D038938 ORTHO05D008690 2.1e-06 55.8 95 37.9
CDE12G0741 Ceratophyllum demersum HOM05D038938 ORTHO05D008690 2.1e-06 55.8 95 37.9
Cfa008911 Carpinus fangiana HOM05D001536 ORTHO05D001442 2.8e-06 55.5 74 40.5
Lalb_Chr09g0329111 Lupinus albus HOM05D001536 ORTHO05D001442 2.8e-06 55.5 68 45.6
Hund05858 Selenicereus undatus HOM05D001536 ORTHO05D001442 2.8e-06 55.5 73 39.7
PGSC0003DMG402028385 Solanum tuberosum HOM05D001536 ORTHO05D001442 2.8e-06 55.5 61 49.2
THA.LOC104808598 Tarenaya hassleriana HOM05D001536 ORTHO05D001442 2.8e-06 55.5 62 40.3
CSS0031318 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 3.6e-06 55.1 99 33.3
CSS0031748 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 3.6e-06 55.1 99 33.3
Cc11_g12410 Coffea canephora HOM05D001536 ORTHO05D001442 3.6e-06 55.1 56 48.2
Haze_11937 Corylus avellana HOM05D001536 ORTHO05D001442 4.7e-06 54.7 74 40.5
SEGI_07957 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 4.7e-06 54.7 43 58.1
SEGI_16187 Sequoiadendron giganteum HOM05D001536 ORTHO05D001442 4.7e-06 54.7 43 58.1
Aqoxy3G00455 Aquilegia oxysepala HOM05D001536 ORTHO05D001442 6.2e-06 54.3 48 54.2
RcHm_v2.0_Chr4g0438891 Rosa chinensis HOM05D001536 ORTHO05D001442 6.2e-06 54.3 55 47.3
Thhalv10006734m.g Eutrema salsugineum HOM05D001536 ORTHO05D001442 8.1e-06 53.9 47 48.9
Lalb_Chr17g0340961 Lupinus albus HOM05D001536 ORTHO05D001442 8.1e-06 53.9 46 54.3
Oeu021094.1 Olea europaea HOM05D001536 ORTHO05D001442 8.1e-06 53.9 61 44.3


User provided reference genes

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