Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 1.5e-86 322.8 159 100.0
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 9.7e-78 293.5 155 91.0
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 3.1e-76 288.5 155 89.0
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 2.9e-74 282.0 156 85.9
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 2.5e-73 278.9 155 86.5
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 3.4e-70 268.5 158 80.4
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 7.5e-70 267.3 149 85.2
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 9.8e-70 266.9 149 83.9
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 8.3e-69 263.8 157 79.6
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 5.4e-68 261.2 158 79.1
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 7.0e-68 260.8 142 82.4
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 7.0e-68 260.8 151 80.8
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 9.1e-68 260.4 155 76.8
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 9.1e-68 260.4 155 78.1
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.6e-67 259.6 138 87.0
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 1.6e-67 259.6 136 84.6
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 3.5e-67 258.5 157 75.8
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 4.5e-67 258.1 139 82.7
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 7.7e-67 257.3 155 76.1
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 7.7e-67 257.3 158 76.6
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 1.3e-66 256.5 153 79.1
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 1.7e-66 256.1 141 81.6
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 1.7e-66 256.1 141 81.6
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.7e-66 256.1 141 81.6
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 1.7e-66 256.1 141 81.6
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 1.7e-66 256.1 141 81.6
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.7e-66 256.1 152 77.0
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 1.7e-66 256.1 152 77.0
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.7e-66 256.1 152 76.3
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 2.2e-66 255.8 157 75.8
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 2.9e-66 255.4 155 75.5
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 2.9e-66 255.4 153 76.5
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 2.9e-66 255.4 135 83.7
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 2.9e-66 255.4 159 74.2
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 2.9e-66 255.4 153 78.4
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 3.8e-66 255.0 155 76.1
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 3.8e-66 255.0 142 80.3
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 3.8e-66 255.0 155 75.5
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 5.0e-66 254.6 141 80.9
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 5.0e-66 254.6 154 77.3
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 5.0e-66 254.6 152 77.0
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 5.0e-66 254.6 146 78.8
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 8.5e-66 253.8 136 83.8
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 1.1e-65 253.4 149 77.2
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 1.1e-65 253.4 145 80.0
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 1.5e-65 253.1 153 77.1
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 1.9e-65 252.7 145 77.9
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.9e-65 252.7 165 72.1
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.9e-65 252.7 139 81.3
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 1.9e-65 252.7 139 81.3
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 1.9e-65 252.7 156 73.1
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 2.5e-65 252.3 154 74.0
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 4.2e-65 251.5 154 75.3
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 5.5e-65 251.1 134 85.8
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 1.2e-64 250.0 159 73.6
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 1.2e-64 250.0 152 75.7
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 1.6e-64 249.6 155 74.2
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 2.1e-64 249.2 155 74.8
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 2.1e-64 249.2 150 78.0
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 2.1e-64 249.2 138 81.9
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 2.1e-64 249.2 155 73.5
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 2.7e-64 248.8 154 76.0
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 2.7e-64 248.8 152 75.0
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 3.6e-64 248.4 156 73.7
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 3.6e-64 248.4 156 75.0
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 3.6e-64 248.4 154 75.3
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 3.6e-64 248.4 150 75.3
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 4.7e-64 248.1 153 75.2
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 4.7e-64 248.1 155 74.2
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 4.7e-64 248.1 155 74.2
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 4.7e-64 248.1 155 74.2
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 8.0e-64 247.3 156 75.0
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 8.0e-64 247.3 146 78.1
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 1.0e-63 246.9 153 75.8
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 1.4e-63 246.5 153 74.5
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 1.4e-63 246.5 134 83.6
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 1.8e-63 246.1 157 73.2
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 1.8e-63 246.1 147 77.6
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 1.8e-63 246.1 159 73.0
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 1.8e-63 246.1 154 74.0
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 5.2e-63 244.6 157 72.0
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 5.2e-63 244.6 145 76.6
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 6.8e-63 244.2 157 72.0
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 6.8e-63 244.2 157 72.0
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 8.8e-63 243.8 157 72.0
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 8.8e-63 243.8 159 71.7
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 1.5e-62 243.0 156 72.4
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 1.5e-62 243.0 141 76.6
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.0e-62 242.7 159 73.6
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 2.0e-62 242.7 152 74.3
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 2.6e-62 242.3 151 71.5
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 2.6e-62 242.3 151 71.5
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 2.6e-62 242.3 157 70.7
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 2.6e-62 242.3 159 73.6
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 2.6e-62 242.3 151 74.2
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.4e-62 241.9 147 76.9
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 3.4e-62 241.9 152 73.0
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 1.7e-61 239.6 157 72.6
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 2.2e-61 239.2 157 70.1
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 9.1e-60 233.8 145 71.7
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 3.5e-59 231.9 135 77.0
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 1.3e-58 229.9 156 67.3
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 1.3e-58 229.9 138 73.2
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 8.6e-58 227.3 172 65.1
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 7.2e-57 224.2 157 66.2
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 4.7e-56 221.5 148 68.2
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.8e-55 219.5 206 56.3
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.3e-55 219.2 199 57.3
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 5.2e-55 218.0 133 71.4
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 8.9e-55 217.2 206 56.8
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 3.4e-54 215.3 147 66.0
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 7.5e-54 214.2 137 76.6
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.9e-49 199.5 158 65.8
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.2e-46 190.3 106 80.2
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 1.2e-46 190.3 150 58.7
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 1.7e-45 186.4 141 63.8
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 3.2e-44 182.2 97 84.5
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 6.0e-43 177.9 140 54.3
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.1e-36 157.1 86 84.9
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 4.3e-25 118.6 75 72.0
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-24 115.9 83 63.9
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 7.3e-17 91.3 82 52.4
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 9.6e-17 90.9 153 34.6
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.2e-14 84.0 132 34.8
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 2.1e-08 63.2 49 63.3


User provided reference genes

Program Settings