Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.1e-226 789.6 394 100.0
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.4e-180 634.8 397 82.4
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 6.0e-177 624.4 395 79.7
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 2.9e-171 605.5 425 75.5
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 2.1e-169 599.4 403 77.7
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.7e-168 596.3 399 77.2
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 1.2e-166 590.1 397 77.6
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.5e-164 583.2 388 78.1
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 2.9e-163 578.9 398 74.9
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 1.0e-160 570.5 396 73.5
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 4.3e-159 565.1 397 73.6
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 4.7e-158 561.6 397 71.8
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 8.1e-158 560.8 397 74.1
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 1.8e-157 559.7 397 72.0
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 2.4e-157 559.3 399 72.2
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.1e-157 558.9 396 71.2
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.1e-157 558.9 396 71.2
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 3.1e-157 558.9 399 71.7
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 3.1e-157 558.9 388 73.5
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 9.0e-157 557.4 397 72.5
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 1.5e-156 556.6 396 71.2
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 2.0e-156 556.2 397 71.0
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 3.4e-156 555.4 413 72.2
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.4e-156 555.1 396 70.7
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 6.4e-155 551.2 399 71.7
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 8.4e-155 550.8 396 71.7
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 3.5e-153 545.4 397 70.5
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 4.6e-153 545.0 397 71.3
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.0e-152 543.9 413 70.5
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.0e-152 543.9 399 71.2
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 3.9e-152 542.0 397 72.0
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 8.7e-152 540.8 397 71.0
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.9e-151 539.7 396 69.9
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 3.3e-151 538.9 398 69.3
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.3e-151 538.5 399 70.4
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 1.6e-150 536.6 397 69.5
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.1e-150 536.2 393 71.0
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.8e-150 535.8 396 69.4
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 3.6e-150 535.4 397 70.3
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 6.2e-150 534.6 390 70.8
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.1e-149 533.9 397 68.8
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.8e-149 533.1 398 68.6
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 2.4e-149 532.7 397 70.0
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 3.1e-149 532.3 413 68.5
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 6.9e-149 531.2 423 66.0
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 9.0e-149 530.8 398 68.6
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.5e-148 530.0 397 69.0
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 2.6e-148 529.3 395 69.1
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 2.6e-148 529.3 388 69.8
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 7.6e-148 527.7 396 68.9
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 9.9e-148 527.3 397 69.3
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 6.4e-147 524.6 396 69.4
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 1.4e-146 523.5 396 69.2
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 2.4e-146 522.7 401 67.3
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 3.2e-146 522.3 396 69.4
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 6.7e-144 514.6 399 66.2
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 2.5e-143 512.7 440 62.3
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 3.3e-143 512.3 393 68.4
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.3e-143 512.3 424 65.1
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.3e-142 510.4 400 68.0
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 1.6e-142 510.0 411 67.4
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.1e-141 507.3 398 67.1
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 2.4e-141 506.1 399 66.2
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.5e-140 503.4 396 66.2
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 2.2e-139 499.6 399 66.4
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 3.8e-139 498.8 395 65.6
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 1.1e-138 497.3 395 65.3
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 3.2e-138 495.7 404 64.6
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 3.2e-138 495.7 395 65.3
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 3.2e-138 495.7 399 65.2
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 2.1e-137 493.0 395 64.3
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 2.1e-137 493.0 395 64.8
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 2.1e-137 493.0 402 66.2
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.7e-137 492.7 399 64.2
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 3.5e-137 492.3 398 64.6
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.6e-137 491.9 353 70.8
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 4.6e-137 491.9 398 64.1
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.0e-136 490.7 390 64.9
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.3e-136 489.6 395 64.6
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 3.9e-136 488.8 387 64.6
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 4.8e-134 481.9 403 63.3
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 6.2e-134 481.5 392 63.8
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 6.2e-134 481.5 390 63.8
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 8.2e-134 481.1 388 64.2
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 1.8e-133 479.9 399 63.2
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.5e-132 476.9 399 62.9
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 8.7e-128 461.1 403 61.8
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 1.6e-126 456.8 387 63.0
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.6e-126 456.8 395 60.5
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 5.3e-125 451.8 430 58.8
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 2.6e-124 449.5 309 74.4
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 5.0e-123 445.3 375 64.0
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 3.2e-122 442.6 391 59.3
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.1e-119 434.1 397 59.2
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 4.3e-119 432.2 393 59.0
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 1.4e-117 427.2 411 56.9
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.6e-116 422.9 415 58.6
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 5.5e-114 415.2 390 57.2
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.1e-113 413.3 390 57.2
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 3.6e-113 412.5 389 56.6
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 2.6e-111 406.4 388 58.5
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 3.7e-110 402.5 437 54.7
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.4e-109 400.6 396 57.8
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 3.4e-108 396.0 401 55.6
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 1.1e-106 391.0 395 54.4
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 7.2e-106 388.3 394 53.6
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 3.3e-103 379.4 269 71.7
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.1e-93 346.3 426 48.8
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 4.5e-92 342.4 294 63.6
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 1.5e-90 337.4 402 47.8
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 3.2e-90 336.3 307 59.0
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 3.0e-88 329.7 304 58.6
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 3.8e-83 312.8 393 44.0
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 7.2e-82 308.5 390 46.9
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 3.4e-79 299.7 381 44.4
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 6.6e-75 285.4 428 41.4
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.9e-74 283.9 236 62.3
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 4.3e-58 229.6 252 49.6
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 3.6e-57 226.5 340 45.0
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.4e-56 224.6 145 80.7
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 1.7e-54 217.6 354 43.5
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 4.6e-52 209.5 154 67.5
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.9e-35 153.3 110 69.1
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.1e-34 151.8 110 68.2
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.9e-34 151.0 110 69.1
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.8e-33 146.4 110 67.3
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 9.3e-29 132.1 118 64.4
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.0e-27 128.6 96 67.7
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 1.6e-25 121.3 117 58.1
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 2.1e-25 120.9 125 52.0
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 1.5e-23 114.8 89 68.5
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 7.6e-23 112.5 93 62.4
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.5e-21 107.5 66 75.8
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 2.1e-20 104.4 139 43.9
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.3e-14 85.1 56 73.2
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.2e-13 80.5 50 74.0
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 5.5e-13 79.7 80 55.0
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.6e-12 78.2 93 46.2
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 8.2e-09 65.9 67 52.2
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 8.2e-09 65.9 180 30.0
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.9e-08 62.8 55 60.0
SEGI_09875 Sequoiadendron giganteum HOM05D001915 ORTHO05D385338 2.9e-06 57.4 44 61.4


User provided reference genes

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