Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 2.0e-98 362.5 182 100.0
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.3e-49 200.3 150 68.0
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 7.3e-37 157.9 129 68.2
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.1e-36 156.4 150 60.0
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.1e-32 144.1 110 70.0
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.9e-32 143.3 152 57.9
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 5.4e-32 141.7 150 56.7
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 5.4e-32 141.7 152 56.6
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.6e-31 140.2 149 53.7
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.0e-30 137.5 150 56.7
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-30 136.3 150 54.7
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 5.1e-30 135.2 150 54.7
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 6.6e-30 134.8 150 54.7
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 8.6e-30 134.4 152 55.3
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 8.6e-30 134.4 150 54.7
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-29 134.0 150 54.0
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.5e-29 133.7 154 53.9
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.5e-29 133.7 156 51.3
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 3.3e-29 132.5 149 51.7
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 7.3e-29 131.3 150 50.0
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 9.6e-29 131.0 150 50.0
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 2.1e-28 129.8 150 52.7
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 3.6e-28 129.0 103 66.0
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 3.6e-28 129.0 150 49.3
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.2e-28 128.3 153 54.2
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.8e-27 126.7 153 52.9
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.8e-27 126.7 155 49.0
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 4.0e-27 125.6 153 52.9
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.0e-27 125.6 153 52.9
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 4.0e-27 125.6 150 48.7
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-26 124.0 153 52.3
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 2.6e-26 122.9 152 50.7
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 5.8e-26 121.7 159 46.5
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 5.8e-26 121.7 146 52.1
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 9.9e-26 120.9 147 49.7
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 1.3e-25 120.6 152 49.3
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 4.9e-25 118.6 152 51.3
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.4e-24 116.3 148 51.4
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 3.2e-24 115.9 150 48.0
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 3.2e-24 115.9 153 48.4
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 9.3e-24 114.4 150 48.7
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-23 113.6 150 48.7
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 1.6e-23 113.6 150 46.0
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 3.5e-23 112.5 149 49.0
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 3.5e-23 112.5 152 51.3
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.6e-23 112.1 150 48.0
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.0e-22 110.9 153 47.7
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-22 110.9 153 46.4
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-22 110.9 153 46.4
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-22 110.9 150 47.3
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.0e-22 110.9 150 47.3
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.0e-22 110.9 152 49.3
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.0e-22 110.9 152 49.3
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-22 110.2 150 47.3
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.7e-22 110.2 169 43.8
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 3.0e-22 109.4 151 45.0
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-22 108.6 163 44.2
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-22 108.6 150 46.7
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-22 108.6 150 46.7
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 5.1e-22 108.6 150 48.0
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 6.6e-22 108.2 149 43.6
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 1.1e-21 107.5 152 45.4
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 1.1e-21 107.5 150 43.3
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 1.5e-21 107.1 150 43.3
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.9e-21 106.7 150 46.7
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.5e-21 106.3 150 44.7
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 2.5e-21 106.3 150 49.3
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-21 105.9 150 44.0
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 9.6e-21 104.4 150 42.7
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.3e-20 104.0 152 47.4
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.6e-20 103.6 149 42.3
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.6e-20 103.6 144 46.5
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 2.1e-20 103.2 150 43.3
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 3.6e-20 102.4 153 47.1
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.2e-20 101.7 150 42.7
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.1e-19 100.9 149 40.9
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.4e-19 100.5 154 40.9
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.4e-19 100.5 156 42.9
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.4e-19 100.5 152 44.1
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 1.8e-19 100.1 150 43.3
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.1e-19 99.4 150 44.0
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 5.3e-19 98.6 157 39.5
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.3e-19 98.6 155 42.6
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 6.9e-19 98.2 149 43.6
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.2e-18 97.4 153 45.1
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 2.0e-18 96.7 149 44.3
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 9.9e-18 94.4 153 43.8
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 3.8e-17 92.4 149 42.3
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 6.4e-17 91.7 149 39.6
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.1e-16 90.9 117 45.3
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 1.1e-16 90.9 149 43.0
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 3.2e-16 89.4 153 39.9
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 4.2e-16 89.0 159 39.6
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 4.2e-16 89.0 77 58.4
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.2e-16 89.0 164 37.8
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 4.2e-16 89.0 197 39.1
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 5.4e-16 88.6 157 38.9
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 5.4e-16 88.6 149 40.3
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.2e-15 87.4 160 39.4
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-15 86.7 61 67.2
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-15 86.7 61 67.2
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.5e-15 85.9 151 39.1
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.3e-14 83.2 149 37.6
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 3.0e-14 82.8 149 40.3
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 3.9e-14 82.4 149 40.9
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.9e-14 82.4 152 38.2
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 5.1e-14 82.0 152 38.2
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 6.7e-14 81.6 151 41.7
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 8.7e-14 81.3 145 41.4
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.5e-13 79.7 158 38.0
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.6e-12 77.0 150 37.3
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.8e-12 76.3 155 36.8
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 2.8e-12 76.3 152 37.5
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 3.6e-12 75.9 154 37.7
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 3.6e-12 75.9 157 37.6
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 4.8e-12 75.5 151 37.1
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 8.1e-12 74.7 154 37.0
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 8.1e-12 74.7 154 37.0
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 8.1e-12 74.7 146 36.3
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 3.1e-11 72.8 153 38.6
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 5.3e-11 72.0 153 35.9
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 6.9e-11 71.6 150 38.7
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.5e-10 70.5 179 32.4
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.5e-10 70.5 158 32.3
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.0e-10 70.1 149 34.9
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.4e-10 69.3 172 34.3
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 4.5e-10 68.9 147 34.7
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 9.9e-10 67.8 156 32.7
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 9.9e-10 67.8 147 34.0
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.7e-09 67.0 160 31.9
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 2.9e-09 66.2 181 30.4
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 4.9e-09 65.5 47 61.7
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 4.9e-09 65.5 47 61.7
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 4.9e-09 65.5 47 61.7
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 4.9e-09 65.5 47 61.7
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 6.4e-09 65.1 156 34.6
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.1e-08 64.3 156 32.7
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.1e-08 64.3 40 72.5
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 1.4e-08 63.9 47 59.6
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 1.9e-08 63.5 40 70.0
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 2.4e-08 63.2 47 57.4
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 3.2e-08 62.8 93 38.7
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 3.2e-08 62.8 152 32.2
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 9.3e-08 61.2 169 28.4
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 9.3e-08 61.2 157 32.5
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-07 60.8 64 45.3
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.2e-07 60.8 64 45.3
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 3.5e-07 59.3 64 43.8
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 3.5e-07 59.3 153 31.4
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 3.5e-07 59.3 54 55.6
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 3.5e-07 59.3 151 31.1
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 3.5e-07 59.3 54 55.6
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.0e-07 58.5 150 30.0
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 7.9e-07 58.2 150 30.7
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 7.9e-07 58.2 67 46.3
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 7.9e-07 58.2 150 30.7
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.3e-06 57.4 41 65.9
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 3.0e-06 56.2 154 28.6
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 3.0e-06 56.2 154 28.6
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 3.0e-06 56.2 39 61.5
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 3.0e-06 56.2 153 30.7
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 3.9e-06 55.8 60 46.7
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 6.7e-06 55.1 48 52.1


User provided reference genes

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