Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014727 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.2e-45 186.0 87 100.0
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.2e-26 120.6 65 86.2
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.3e-25 118.6 65 84.6
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.4e-24 114.8 61 85.2
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 1.2e-13 79.7 57 59.6
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 2.3e-12 75.5 57 59.6
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 6.6e-12 73.9 50 64.0
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 6.6e-12 73.9 50 66.0
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 1.1e-11 73.2 55 60.0
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 1.5e-11 72.8 50 64.0
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 1.9e-11 72.4 50 64.0
COL.COLO4_05438 Corchorus olitorius HOM05D005927 ORTHO05D006952 2.5e-11 72.0 55 60.0
CSS0047969 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.3e-11 71.2 55 58.2
CSS0031533 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.6e-11 70.9 55 60.0
Carub.0007s2841 Capsella rubella HOM05D005927 ORTHO05D006952 7.3e-11 70.5 50 58.0
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 9.6e-11 70.1 56 55.4
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 9.6e-11 70.1 55 60.0
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 9.6e-11 70.1 50 60.0
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 9.6e-11 70.1 55 56.4
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 1.3e-10 69.7 55 58.2
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 1.3e-10 69.7 56 55.4
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 1.3e-10 69.7 50 62.0
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 1.6e-10 69.3 58 55.2
AL7G42420 Arabidopsis lyrata HOM05D005927 ORTHO05D006952 2.1e-10 68.9 49 57.1
AT4G14010 Arabidopsis thaliana HOM05D005927 ORTHO05D006952 2.1e-10 68.9 49 57.1
arahy.Tifrunner.gnm1.ann1.DI9ALX Arachis hypogaea HOM05D005927 ORTHO05D006952 2.1e-10 68.9 55 60.0
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.1e-10 68.9 55 58.2
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 2.1e-10 68.9 55 58.2
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 2.1e-10 68.9 55 58.2
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 2.1e-10 68.9 55 58.2
arahy.Tifrunner.gnm1.ann1.6R0Q3T Arachis hypogaea HOM05D005927 ORTHO05D006952 2.8e-10 68.6 55 58.2
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 2.8e-10 68.6 55 56.4
Nn1g08157 Nelumbo nucifera HOM05D005927 ORTHO05D006952 3.6e-10 68.2 55 58.2
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 3.6e-10 68.2 55 56.4
Thecc.04G193700 Theobroma cacao HOM05D005927 ORTHO05D006952 3.6e-10 68.2 55 56.4
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 4.8e-10 67.8 57 52.6
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 4.8e-10 67.8 52 57.7
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 4.8e-10 67.8 55 56.4
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.2e-10 67.4 55 58.2
Lalb_Chr25g0289221 Lupinus albus HOM05D005927 ORTHO05D006952 8.1e-10 67.0 54 57.4
PGR083G0422 Punica granatum HOM05D005927 ORTHO05D006952 8.1e-10 67.0 56 55.4
PGR083G1024 Punica granatum HOM05D005927 ORTHO05D006952 8.1e-10 67.0 56 55.4
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.1e-09 66.6 55 58.2
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 1.1e-09 66.6 52 55.8
Prupe.1G167100 Prunus persica HOM05D005927 ORTHO05D006952 1.1e-09 66.6 55 58.2
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 1.1e-09 66.6 54 59.3
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.4e-09 66.2 55 54.5
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.4e-09 66.2 57 54.4
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 1.4e-09 66.2 55 56.4
Thhalv10026595m.g Eutrema salsugineum HOM05D005927 ORTHO05D006952 1.8e-09 65.9 50 52.0
Hma1.2p1_0349F.1_g132010 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.8e-09 65.9 44 65.9
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.8e-09 65.9 44 65.9
Hma1.2p1_2624F.1_g325626 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.8e-09 65.9 44 65.9
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 2.4e-09 65.5 55 54.5
DCAR_026663 Daucus carota HOM05D005927 ORTHO05D006952 2.4e-09 65.5 55 56.4
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 2.4e-09 65.5 58 51.7
BcaC02g09370 Brassica carinata HOM05D005927 ORTHO05D006952 3.1e-09 65.1 50 54.0
A03p43360 Brassica napus HOM05D005927 ORTHO05D006952 3.1e-09 65.1 54 50.0
A04p08120 Brassica napus HOM05D005927 ORTHO05D006952 3.1e-09 65.1 50 54.0
C04p41800 Brassica napus HOM05D005927 ORTHO05D006952 3.1e-09 65.1 50 54.0
BolC4t25761H Brassica oleracea HOM05D005927 ORTHO05D006952 3.1e-09 65.1 50 54.0
BraA04t16501Z Brassica rapa HOM05D005927 ORTHO05D006952 3.1e-09 65.1 50 54.0
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 3.1e-09 65.1 56 46.4
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.1e-09 65.1 51 60.8
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 4.0e-09 64.7 54 48.1
BraA03t13474Z Brassica rapa HOM05D005927 ORTHO05D006952 4.0e-09 64.7 54 50.0
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 4.0e-09 64.7 54 59.3
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 4.0e-09 64.7 55 54.5
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 4.0e-09 64.7 44 65.9
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.3e-09 64.3 55 54.5
Nn1g08158 Nelumbo nucifera HOM05D005927 ORTHO05D006952 5.3e-09 64.3 53 54.7
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 5.3e-09 64.3 48 60.4
Sp7g11810 Schrenkiella parvula HOM05D005927 ORTHO05D006952 5.3e-09 64.3 50 52.0
BcaB02g08639 Brassica carinata HOM05D005927 ORTHO05D006952 6.9e-09 63.9 50 52.0
CSS0046414 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.0e-08 62.4 55 54.5
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 2.0e-08 62.4 55 52.7
CiPaw.02G063500 Carya illinoinensis HOM05D005927 ORTHO05D006952 2.6e-08 62.0 57 52.6
Duzib151G0391 Durio zibethinus HOM05D005927 ORTHO05D006952 2.6e-08 62.0 46 60.9
Sp3g21500 Schrenkiella parvula HOM05D005927 ORTHO05D006952 2.6e-08 62.0 53 49.1
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 2.6e-08 62.0 52 53.8
BcaB03g14615 Brassica carinata HOM05D005927 ORTHO05D006952 3.4e-08 61.6 54 46.3
CiPaw.01G115500 Carya illinoinensis HOM05D005927 ORTHO05D006952 4.4e-08 61.2 50 54.0
Nitab4.5_0019370g0010 Nicotiana tabacum HOM05D005927 ORTHO05D006952 4.4e-08 61.2 50 56.0
AUR62020874 Chenopodium quinoa HOM05D005927 ORTHO05D006952 9.9e-08 60.1 55 52.7
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 9.9e-08 60.1 47 57.4
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 1.7e-07 59.3 55 54.5
AUR62018545 Chenopodium quinoa HOM05D005927 ORTHO05D006952 2.9e-07 58.5 55 50.9
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 3.8e-07 58.2 55 50.9
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 8.4e-07 57.0 56 46.4
Atru.chr4.1553 Acer truncatum HOM05D005927 ORTHO05D006952 4.2e-06 54.7 45 55.6
Manes.05G202960 Manihot esculenta HOM05D005927 ORTHO05D006952 4.2e-06 54.7 53 45.3
Ciclev10006262m.g Citrus clementina HOM05D005927 ORTHO05D006952 7.1e-06 53.9 45 53.3
Gohir.A09G207300 Gossypium hirsutum HOM05D005927 ORTHO05D006952 7.1e-06 53.9 49 53.1
Gohir.D09G200900 Gossypium hirsutum HOM05D005927 ORTHO05D006952 7.1e-06 53.9 49 53.1


User provided reference genes

Program Settings