Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 0.0e+00 1192.6 623 100.0
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 0.0e+00 1109.7 633 91.9
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.3e-312 1073.5 659 88.0
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.1e-277 957.2 621 83.9
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 3.1e-260 901.7 639 75.1
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 8.6e-255 883.6 638 74.0
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 8.1e-253 877.1 621 74.2
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 4.0e-252 874.8 640 73.6
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 5.6e-238 827.8 610 70.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.3e-230 802.0 633 69.0
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 4.3e-230 801.6 620 67.6
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.1e-228 795.4 631 68.3
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 3.8e-226 788.5 646 65.5
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 1.4e-225 786.6 693 62.8
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.4e-225 786.6 641 66.6
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 1.9e-222 776.2 642 65.4
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.6e-221 773.1 620 66.5
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 6.2e-221 771.2 614 66.6
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 8.1e-221 770.8 642 64.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.5e-219 766.5 619 65.4
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.4e-219 765.4 641 64.4
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 2.2e-218 762.7 610 66.6
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 2.9e-218 762.3 639 63.5
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.8e-218 761.9 609 66.3
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.5e-217 759.2 612 65.8
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 2.5e-217 759.2 585 68.0
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 4.2e-217 758.4 611 66.1
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.2e-216 756.9 641 63.8
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.7e-216 755.7 641 64.0
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 6.0e-216 754.6 616 66.7
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 7.9e-216 754.2 640 63.3
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.0e-215 752.3 623 65.2
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 8.7e-215 750.7 604 65.9
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 8.7e-215 750.7 640 66.9
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.7e-213 745.3 636 62.4
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.4e-212 742.7 596 64.3
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 3.2e-209 732.3 584 64.6
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 3.2e-209 732.3 607 63.8
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 5.5e-209 731.5 604 63.9
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.1e-206 723.8 616 63.0
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.5e-206 723.4 634 60.9
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.5e-206 722.6 610 62.5
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 3.3e-206 722.2 601 62.9
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.6e-205 719.9 611 64.5
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 3.4e-203 712.2 625 62.2
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 5.9e-203 711.4 590 64.6
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 8.5e-202 707.6 590 62.9
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.5e-201 706.1 643 59.3
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.5e-201 706.1 602 64.1
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 4.2e-201 705.3 589 63.7
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 4.2e-201 705.3 627 62.0
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 5.5e-201 704.9 612 63.4
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 2.1e-200 703.0 620 61.0
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.1e-200 703.0 609 61.2
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 5.1e-199 698.4 647 60.9
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 8.8e-199 697.6 573 65.3
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.1e-198 697.2 574 65.2
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 2.0e-198 696.4 606 60.4
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 7.4e-198 694.5 605 61.0
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-197 692.6 609 60.3
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 6.3e-197 691.4 613 60.4
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.1e-196 688.7 623 62.4
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 2.6e-195 686.0 603 62.0
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 4.5e-195 685.3 610 61.5
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 5.9e-195 684.9 612 60.0
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 6.5e-194 681.4 600 58.8
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 5.5e-193 678.3 615 61.1
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 9.4e-193 677.6 581 61.8
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 4.7e-192 675.2 571 63.4
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 6.1e-192 674.9 586 60.8
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.0e-191 674.1 623 58.1
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.0e-191 674.1 623 58.1
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 3.0e-191 672.5 597 59.6
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 8.8e-191 671.0 589 60.4
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.0e-190 669.8 634 57.7
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 4.4e-190 668.7 578 61.2
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 7.4e-190 667.9 615 58.9
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 4.8e-189 665.2 572 62.4
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.1e-188 664.1 615 57.7
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.1e-188 664.1 578 61.6
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.4e-188 663.7 638 59.6
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.8e-188 663.3 617 58.2
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 4.1e-188 662.1 639 57.7
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 7.0e-188 661.4 615 57.9
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.7e-186 656.8 614 57.5
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 2.5e-185 652.9 615 59.0
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 4.2e-185 652.1 634 57.3
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.7e-184 649.4 584 60.6
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 6.1e-184 648.3 593 58.0
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 5.2e-183 645.2 613 59.1
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 6.7e-183 644.8 636 56.1
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 4.8e-181 638.6 623 55.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 7.7e-179 631.3 634 56.3
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.2e-177 625.9 613 59.4
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.6e-176 623.6 624 55.0
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 4.7e-176 622.1 622 56.8
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 2.7e-171 606.3 586 56.5
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 3.2e-169 599.4 517 62.9
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 5.5e-169 598.6 620 53.7
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 5.2e-167 592.0 604 54.1
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 8.8e-167 591.3 510 62.4
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 2.2e-165 586.6 603 51.4
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.4e-164 583.2 601 55.1
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 8.6e-162 574.7 595 55.6
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 5.6e-161 572.0 564 56.2
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.9e-157 559.7 600 54.0
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 9.2e-156 554.7 629 52.8
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.1e-144 516.9 481 62.0
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.1e-139 500.4 467 58.7
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 2.3e-135 486.9 604 46.4
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.3e-120 438.0 580 46.2
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 8.1e-120 435.3 633 42.3
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 7.6e-118 428.7 628 41.4
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.7e-107 393.7 372 59.1
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 3.9e-106 389.8 370 58.1
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.8e-95 354.4 370 55.9
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 6.7e-90 335.9 557 40.8
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 7.4e-89 332.4 267 65.2
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 3.4e-78 297.0 344 51.2
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.3e-77 295.0 355 49.9
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 2.7e-75 287.3 381 45.1
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.2e-72 277.7 284 55.6
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 3.6e-67 260.4 226 61.5
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-64 251.9 178 80.9
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.5e-60 238.4 227 55.5
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 7.2e-60 236.1 303 43.9
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 9.4e-60 235.7 206 57.3
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 3.6e-59 233.8 318 40.9
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.7e-57 226.5 237 52.3
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 3.2e-52 210.7 119 85.7
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.1e-47 193.7 121 76.9
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.6e-46 191.8 179 59.2
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 8.6e-45 186.0 231 42.4
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.1e-44 185.7 156 64.7
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 8.0e-43 179.5 182 48.4
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 6.4e-40 169.9 134 69.4
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.4e-39 168.7 178 50.0
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 4.1e-39 167.2 149 59.7
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.6e-38 163.7 283 35.0
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 3.3e-36 157.5 102 73.5
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 8.0e-35 152.9 163 52.8
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.0e-33 148.3 125 60.0
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.6e-33 147.9 118 63.6
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.0e-29 136.0 119 67.2
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.7e-29 135.2 284 31.0
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-28 131.3 159 44.7
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.3e-28 129.8 128 63.3
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.2e-25 122.5 87 72.4
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.6e-25 121.3 87 72.4
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 2.2e-24 118.2 183 42.1
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 6.4e-24 116.7 65 83.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 1.1e-23 115.9 108 55.6
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 7.1e-23 113.2 75 77.3
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.5e-20 104.8 74 74.3
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 7.3e-20 103.2 70 71.4
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.2e-19 102.4 143 42.0
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.8e-19 101.3 178 35.4
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 7.6e-17 93.2 79 63.3
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 9.9e-17 92.8 101 51.5
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 8.4e-16 89.7 99 54.5
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 3.2e-15 87.8 87 58.6
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.2e-11 75.9 49 75.5
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 2.0e-09 68.6 49 67.3
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 9.9e-09 66.2 48 58.3
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 1.1e-07 62.8 47 57.4
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.4e-07 62.4 123 34.1


User provided reference genes

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