Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.9e-49 198.7 93 100.0
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.1e-44 183.0 92 93.5
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 3.5e-43 177.9 92 91.3
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.9e-41 172.2 92 89.1
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 4.3e-41 171.0 92 87.0
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 5.6e-41 170.6 91 86.8
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 9.5e-41 169.9 91 87.9
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 9.5e-41 169.9 91 87.9
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.8e-40 168.3 91 86.8
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 3.6e-40 167.9 89 88.8
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 8.0e-40 166.8 91 85.7
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.0e-39 166.4 87 88.5
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.0e-39 166.4 91 83.5
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.0e-39 166.4 92 82.6
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.0e-39 166.4 92 82.6
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.0e-39 166.4 92 82.6
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.8e-39 165.6 90 86.7
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.8e-39 165.6 91 82.4
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.8e-39 165.6 91 83.5
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.8e-39 165.6 91 83.5
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.8e-39 165.6 91 83.5
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 2.3e-39 165.2 92 81.5
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 4.0e-39 164.5 90 84.4
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 5.2e-39 164.1 90 85.6
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 6.8e-39 163.7 90 82.2
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 6.8e-39 163.7 91 84.6
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 6.8e-39 163.7 91 80.2
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 8.9e-39 163.3 91 83.5
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 8.9e-39 163.3 91 83.5
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.5e-38 162.5 87 87.4
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.5e-38 162.5 111 73.0
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 2.0e-38 162.2 89 84.3
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.0e-38 162.2 89 84.3
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 2.0e-38 162.2 91 81.3
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.6e-38 161.8 92 79.3
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 3.4e-38 161.4 91 81.3
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 4.4e-38 161.0 91 83.5
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 7.5e-38 160.2 91 82.4
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 9.8e-38 159.8 91 80.2
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 9.8e-38 159.8 92 78.3
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 9.8e-38 159.8 92 78.3
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.3e-37 159.5 93 80.6
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.9e-37 158.3 92 79.3
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 8.3e-37 156.8 91 81.3
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 8.3e-37 156.8 91 78.0
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 1.4e-36 156.0 91 81.3
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.4e-36 156.0 91 79.1
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.9e-36 155.6 92 80.4
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.2e-36 154.8 91 78.0
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 7.0e-36 153.7 92 78.3
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 7.0e-36 153.7 91 80.2
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.2e-35 152.9 79 87.3
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.6e-35 152.5 86 80.2
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.6e-35 152.5 91 79.1
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.6e-35 152.5 91 79.1
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.6e-35 152.5 91 79.1
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.6e-35 152.5 92 77.2
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.6e-35 152.5 91 79.1
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 2.0e-35 152.1 92 79.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.6e-35 151.0 87 77.0
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 4.6e-35 151.0 85 82.4
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 4.6e-35 151.0 82 82.9
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 7.8e-35 150.2 92 72.8
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.0e-34 149.8 91 73.6
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.7e-34 149.1 91 71.4
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.7e-34 149.1 92 75.0
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.7e-34 149.1 85 80.0
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.7e-34 149.1 85 78.8
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.3e-34 148.7 89 78.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.3e-34 148.7 86 79.1
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 3.0e-34 148.3 91 76.9
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 3.0e-34 148.3 82 79.3
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 3.0e-34 148.3 89 77.5
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 3.9e-34 147.9 91 76.9
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 6.6e-34 147.1 91 70.3
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 6.6e-34 147.1 91 70.3
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 6.6e-34 147.1 91 70.3
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 6.6e-34 147.1 92 73.9
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 6.6e-34 147.1 79 84.8
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 8.6e-34 146.7 91 71.4
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 8.6e-34 146.7 90 74.4
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.1e-33 146.4 85 78.8
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.1e-33 146.4 91 74.7
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.5e-33 146.0 85 76.5
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.9e-33 145.6 91 70.3
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.9e-33 145.6 78 80.8
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.9e-33 145.6 78 80.8
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 2.5e-33 145.2 79 79.7
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.5e-33 145.2 79 83.5
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.3e-33 144.8 88 71.6
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.2e-32 142.9 89 71.9
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 2.8e-32 141.7 88 70.5
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.8e-32 141.7 88 69.3
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 6.2e-32 140.6 111 62.2
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 8.1e-32 140.2 89 69.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 8.1e-32 140.2 89 69.7
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 8.1e-32 140.2 89 69.7
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 8.1e-32 140.2 89 69.7
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.4e-31 139.4 86 69.8
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.4e-31 139.4 86 69.8
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.5e-30 136.0 88 68.2
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 7.5e-30 133.7 88 67.0
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.3e-29 132.9 86 67.4
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 8.3e-29 130.2 93 62.4
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 1.9e-28 129.0 66 86.4
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 3.2e-28 128.3 68 82.4
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 7.1e-28 127.1 66 83.3
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.1e-27 125.6 66 83.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 4.6e-27 124.4 65 83.1
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 2.3e-26 122.1 83 68.7
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.9e-26 121.3 80 71.2
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 6.6e-26 120.6 90 58.9
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 5.6e-25 117.5 72 75.0
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 9.5e-25 116.7 63 79.4
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 2.3e-23 112.1 63 77.8
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 3.1e-23 111.7 91 61.5
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 4.0e-23 111.3 62 79.0
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 5.2e-23 110.9 74 64.9
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 4.4e-22 107.8 66 69.7
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.6e-22 107.1 53 84.9
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 9.9e-22 106.7 64 76.6
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 4.9e-21 104.4 84 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 6.4e-21 104.0 77 58.4
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 3.2e-20 101.7 60 81.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 5.4e-20 100.9 63 66.7
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.2e-19 99.8 65 72.3
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.6e-19 99.4 64 65.6
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 6.0e-19 97.4 60 73.3
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.8e-15 85.9 55 70.9
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.5e-14 82.8 58 65.5
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 3.4e-14 81.6 79 48.1
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 9.9e-14 80.1 73 50.7
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 9.9e-14 80.1 82 46.3
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 9.3e-12 73.6 33 90.9
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 1.2e-11 73.2 80 48.8
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 8.1e-08 60.5 54 46.3


User provided reference genes

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