Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 4.2e-43 177.6 86 100.0
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 4.2e-43 177.6 86 100.0
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 1.6e-10 69.3 37 86.5
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 4.7e-10 67.8 37 81.1
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 6.1e-10 67.4 37 81.1
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 8.0e-10 67.0 35 85.7
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 8.0e-10 67.0 35 85.7
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 1.0e-09 66.6 37 81.1
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 1.4e-09 66.2 37 81.1
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 1.8e-09 65.9 37 78.4
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 1.8e-09 65.9 37 78.4
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 1.8e-09 65.9 37 81.1
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 2.3e-09 65.5 37 78.4
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 2.3e-09 65.5 35 85.7
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 3.0e-09 65.1 35 82.9
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 3.0e-09 65.1 37 75.7
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 3.0e-09 65.1 37 75.7
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 3.0e-09 65.1 36 77.8
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 4.0e-09 64.7 33 90.9
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 4.0e-09 64.7 37 78.4
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 5.2e-09 64.3 35 82.9
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 1.2e-08 63.2 37 78.4
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 1.5e-08 62.8 36 77.8
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 1.5e-08 62.8 34 79.4
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 2.0e-08 62.4 38 73.7
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 2.0e-08 62.4 35 80.0
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 2.6e-08 62.0 38 81.6
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 2.6e-08 62.0 37 75.7
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 2.6e-08 62.0 35 80.0
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 1.3e-07 59.7 36 69.4
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 2.8e-07 58.5 36 75.0
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 3.7e-07 58.2 40 75.0
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 8.3e-07 57.0 31 80.6
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 8.3e-07 57.0 36 72.2
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 8.3e-07 57.0 36 72.2
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 8.3e-07 57.0 36 72.2
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 8.3e-07 57.0 36 72.2
DCAR_021460 Daucus carota HOM05D008250 ORTHO05D010361 1.1e-06 56.6 37 70.3
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 1.4e-06 56.2 37 70.3
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 1.8e-06 55.8 45 64.4
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 4.1e-06 54.7 37 67.6
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 5.4e-06 54.3 36 69.4
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 5.4e-06 54.3 36 69.4
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 5.4e-06 54.3 36 69.4
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 5.4e-06 54.3 36 69.4
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 5.4e-06 54.3 34 73.5
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 7.0e-06 53.9 37 67.6
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 9.2e-06 53.5 43 62.8


User provided reference genes

Program Settings