Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 5.1e-75 284.3 138 100.0
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 1.5e-74 282.7 138 99.3
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 1.2e-55 219.9 132 78.8
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 2.3e-51 205.7 114 81.6
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 6.7e-51 204.1 129 77.5
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 1.1e-48 196.8 114 81.6
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 1.4e-48 196.4 128 71.9
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 9.1e-48 193.7 138 65.9
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 9.1e-48 193.7 138 66.7
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 1.6e-47 193.0 138 66.7
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.3e-46 189.9 124 72.6
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.3e-46 189.9 124 72.6
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.3e-46 189.9 124 72.6
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 1.3e-46 189.9 124 71.8
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.7e-46 189.5 138 65.9
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 5.0e-46 188.0 134 67.2
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 5.0e-46 188.0 138 68.8
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 3.2e-45 185.3 128 67.2
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 5.5e-45 184.5 121 71.9
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 9.4e-45 183.7 131 67.2
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 1.6e-44 183.0 128 64.8
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 1.6e-44 183.0 128 71.1
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 2.1e-44 182.6 138 65.9
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 2.1e-44 182.6 139 63.3
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 4.7e-44 181.4 126 65.9
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 4.7e-44 181.4 128 64.8
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 6.1e-44 181.0 113 73.5
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 6.1e-44 181.0 128 64.1
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 6.1e-44 181.0 127 68.5
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 8.0e-44 180.6 127 66.9
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 8.0e-44 180.6 128 64.1
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 8.0e-44 180.6 129 66.7
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 1.0e-43 180.3 126 66.7
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 1.4e-43 179.9 133 62.4
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 1.8e-43 179.5 115 70.4
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 1.8e-43 179.5 127 67.7
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 4.0e-43 178.3 128 63.3
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 5.2e-43 177.9 127 65.4
Migut.D00285 Erythranthe guttata HOM05D006839 ORTHO05D007872 1.5e-42 176.4 132 65.2
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 2.0e-42 176.0 116 69.0
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 4.4e-42 174.9 132 63.6
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 5.7e-42 174.5 136 61.0
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 7.5e-42 174.1 129 64.3
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 1.3e-41 173.3 129 64.3
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.3e-41 171.0 136 61.0
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 8.3e-41 170.6 113 68.1
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 8.3e-41 170.6 111 67.6
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 8.3e-41 170.6 111 67.6
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 8.3e-41 170.6 130 62.3
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 1.8e-40 169.5 129 58.1
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.8e-40 169.5 133 62.4
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 5.4e-40 167.9 137 59.9
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 7.0e-40 167.5 137 58.4
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 7.0e-40 167.5 137 58.4
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 1.2e-39 166.8 134 61.2
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 2.0e-39 166.0 124 64.5
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 2.0e-39 166.0 137 59.1
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 1.0e-38 163.7 129 62.0
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 1.7e-38 162.9 128 61.7
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 6.5e-38 161.0 121 61.2
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 1.1e-37 160.2 127 61.4
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 4.2e-37 158.3 113 69.0
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 7.2e-37 157.5 128 58.6
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 9.4e-37 157.1 121 60.3
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 1.6e-36 156.4 126 61.1
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 1.2e-34 150.2 116 58.6
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.7e-33 145.2 134 54.5
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 1.6e-31 139.8 112 57.1
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 1.0e-30 137.1 131 50.4
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.5e-29 133.3 128 51.6
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 1.0e-27 127.1 131 48.1
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 1.0e-27 127.1 127 52.0
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 3.0e-27 125.6 112 52.7
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 6.8e-27 124.4 112 52.7
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 3.4e-26 122.1 124 50.0
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 7.5e-26 120.9 127 44.1
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 3.7e-25 118.6 130 45.4
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.4e-24 115.9 112 48.2
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 3.2e-24 115.5 129 44.2
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 9.2e-24 114.0 135 42.2
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 2.0e-23 112.8 104 51.9
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.9e-22 108.6 115 45.2
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.9e-21 106.3 108 46.3
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.3e-21 105.5 128 44.5
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.3e-21 105.5 127 43.3
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.6e-20 103.2 99 49.5
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.1e-20 102.8 112 40.2
PGSC0003DMG400029246 Solanum tuberosum HOM05D006839 ORTHO05D007872 2.8e-20 102.4 83 57.8
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.7e-20 101.7 93 51.6
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 8.0e-20 100.9 123 40.7
SMO364G0778 Selaginella moellendorffii HOM05D006839 ORTHO05D007872 8.0e-20 100.9 128 37.5
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.3e-19 99.4 115 42.6
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.8e-19 97.8 128 42.2
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 6.8e-19 97.8 130 39.2
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.0e-18 96.3 128 39.8
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.6e-18 95.9 128 39.1
Actinidia21107 Actinidia chinensis HOM05D000265 ORTHO05D000161 1.3e-17 93.6 55 74.5
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.9e-17 92.4 129 38.0
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.7e-17 92.0 114 41.2
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 3.7e-17 92.0 116 45.7
Eucgr.J01400 Eucalyptus grandis HOM05D006839 ORTHO05D007872 8.3e-17 90.9 113 41.6
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.9e-16 89.7 126 38.9
Eucgr.A00847 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.2e-16 89.0 125 33.6
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.6e-15 86.7 88 48.9
Nitab4.5_0009973g0030 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.6e-15 85.1 110 45.5
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 6.0e-15 84.7 132 34.1
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 1.5e-13 80.1 141 31.9
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 1.5e-13 80.1 141 31.9
Nitab4.5_0000003g0350 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.5e-13 79.3 111 39.6
PGR119G1259 Punica granatum HOM05D006839 ORTHO05D007872 4.3e-13 78.6 109 39.4
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 3.6e-12 75.5 141 34.8
AagrBONN_evm.TU.Sc2ySwM_344.1663 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.2e-10 70.5 115 35.7
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.5e-10 70.1 106 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1661 Anthoceros agrestis HOM05D058811 ORTHO05D019592 2.2e-09 66.2 106 32.1
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 2.2e-09 66.2 141 33.3
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 4.9e-09 65.1 104 32.7
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 8.3e-09 64.3 112 34.8
Peaxi162Scf00681g00011 Petunia axillaris HOM05D006839 ORTHO05D007872 4.1e-08 62.0 113 37.2
AagrBONN_evm.TU.Sc2ySwM_368.904 Anthoceros agrestis HOM05D032606 ORTHO05D007872 2.7e-07 59.3 113 31.9
LjContig00408g0014473 Lotus japonicus HOM05D000022 ORTHO05D000071 3.5e-07 58.9 84 40.5
AagrBONN_evm.TU.Sc2ySwM_344.1662 Anthoceros agrestis HOM05D032874 ORTHO05D007872 4.6e-07 58.5 107 29.9
SEGI_08922 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 4.6e-07 58.5 111 28.8
Nitab4.5_0000771g0200 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.0e-07 58.2 101 34.7
TAR629G0888 Trochodendron aralioides HOM05D000022 ORTHO05D000306 2.3e-06 56.2 103 33.0
COL.COLO4_04504 Corchorus olitorius HOM05D000022 ORTHO05D000306 3.0e-06 55.8 75 37.3
TPR.G5552 Trifolium pratense HOM05D000022 ORTHO05D000071 3.0e-06 55.8 52 46.2
LjContig00408g0021573 Lotus japonicus HOM05D000022 ORTHO05D000071 3.9e-06 55.5 84 38.1
TPR.G10812 Trifolium pratense HOM05D000022 ORTHO05D000306 3.9e-06 55.5 52 48.1
Lj5g0003096 Lotus japonicus HOM05D000022 ORTHO05D000071 5.1e-06 55.1 52 48.1
Manes.12G052300 Manihot esculenta HOM05D000022 ORTHO05D000306 5.1e-06 55.1 75 36.0
Zm00001eb291380 Zea mays HOM05D000022 ORTHO05D000071 5.1e-06 55.1 74 39.2
Glyma.09G151400 Glycine max HOM05D000022 ORTHO05D010537 6.6e-06 54.7 52 46.2
Sed0006695 Sechium edule HOM05D000022 ORTHO05D000306 6.6e-06 54.7 54 44.4
Potri.004G023700 Populus trichocarpa HOM05D000022 ORTHO05D000071 8.6e-06 54.3 79 35.4
PGR005G0005 Punica granatum HOM05D023640 ORTHO05D019592 8.6e-06 54.3 85 38.8
SEGI_31021 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 8.6e-06 54.3 86 34.9


User provided reference genes

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