Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.4e-76 289.7 163 100.0
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.3e-65 251.5 164 85.4
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 8.3e-40 167.5 160 70.6
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 8.8e-34 147.5 165 57.6
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 2.6e-33 146.0 168 53.0
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 8.3e-32 141.0 178 51.7
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.4e-31 140.2 154 55.2
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.4e-31 140.2 154 55.2
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 9.1e-31 137.5 170 51.8
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.6e-30 136.7 154 54.5
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 3.8e-29 132.1 143 57.3
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.1e-28 130.6 156 52.6
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 1.5e-28 130.2 167 50.9
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 9.5e-28 127.5 165 50.9
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 6.1e-27 124.8 169 47.9
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.0e-26 124.0 168 50.0
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.8e-26 123.2 172 47.1
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.3e-26 122.9 164 51.8
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.3e-26 122.9 152 50.7
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.0e-26 122.5 154 54.5
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 5.2e-26 121.7 164 51.2
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 5.2e-26 121.7 155 49.0
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 5.2e-26 121.7 153 55.6
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.2e-25 120.6 170 49.4
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.2e-25 120.6 158 48.7
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.5e-25 120.2 173 52.0
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.5e-25 120.2 151 50.3
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.0e-25 119.8 170 51.8
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.0e-25 119.8 170 51.8
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.6e-25 119.4 164 47.0
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.6e-25 119.4 164 47.0
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.6e-25 119.4 164 45.7
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.6e-25 119.4 152 50.0
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.6e-25 119.4 152 50.0
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.6e-25 119.4 171 56.7
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.6e-25 119.4 163 50.3
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 3.4e-25 119.0 164 50.0
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.4e-25 118.6 174 50.0
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 5.7e-25 118.2 164 46.3
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 7.5e-25 117.9 172 45.3
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.3e-24 117.1 159 52.8
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 2.8e-24 115.9 153 50.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 3.7e-24 115.5 168 48.2
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.3e-24 114.8 135 63.7
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 6.3e-24 114.8 172 44.2
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 8.3e-24 114.4 134 59.0
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.4e-23 113.6 151 57.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.8e-23 113.2 132 59.8
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.8e-23 113.2 159 44.7
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 2.4e-23 112.8 166 47.0
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 2.4e-23 112.8 166 47.0
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.2e-23 112.5 163 46.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 3.2e-23 112.5 145 49.7
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 5.4e-23 111.7 169 49.7
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 7.0e-23 111.3 146 50.0
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 7.0e-23 111.3 182 46.7
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.2e-22 110.5 167 42.5
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.0e-22 109.8 146 49.3
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 2.0e-22 109.8 161 47.2
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 3.5e-22 109.0 184 46.2
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 4.5e-22 108.6 176 44.3
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 5.9e-22 108.2 164 47.0
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 7.8e-22 107.8 166 44.6
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.3e-21 107.1 170 48.2
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.1e-20 104.0 163 50.3
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.1e-20 104.0 169 42.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.5e-20 103.6 174 44.3
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.5e-20 103.6 155 45.2
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 3.3e-20 102.4 163 44.2
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 3.3e-20 102.4 180 40.0
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.3e-20 102.4 156 42.3
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.3e-20 102.4 156 42.3
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.3e-20 102.1 183 39.3
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.3e-20 102.1 169 45.0
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.6e-20 101.7 183 38.8
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 5.6e-20 101.7 79 77.2
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 7.3e-20 101.3 168 47.0
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 9.5e-20 100.9 166 41.6
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.2e-19 100.5 198 38.4
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.2e-19 100.5 170 45.3
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 2.1e-19 99.8 151 45.0
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.8e-19 99.4 185 38.9
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 2.8e-19 99.4 175 44.6
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.6e-19 99.0 192 39.1
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.6e-19 99.0 192 39.1
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 3.6e-19 99.0 190 42.1
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 4.7e-19 98.6 183 39.3
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.7e-19 98.6 157 42.7
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 8.0e-19 97.8 185 38.9
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 8.0e-19 97.8 170 42.9
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 8.0e-19 97.8 184 41.8
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.8e-18 96.7 202 39.6
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 5.2e-18 95.1 196 38.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 6.8e-18 94.7 185 38.4
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 6.8e-18 94.7 168 39.3
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 8.9e-18 94.4 159 43.4
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 8.9e-18 94.4 194 38.7
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 8.9e-18 94.4 165 40.6
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 2.0e-17 93.2 192 42.2
CSS0001263 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.6e-17 92.8 135 58.5
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 2.6e-17 92.8 181 42.5
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 4.4e-17 92.0 171 40.4
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 7.5e-17 91.3 167 38.9
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.3e-16 90.5 176 38.1
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.2e-16 89.7 141 48.9
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.9e-16 89.4 167 44.9
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 3.7e-16 89.0 165 44.2
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 6.4e-16 88.2 144 45.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 8.3e-16 87.8 168 41.7
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 8.3e-16 87.8 177 41.8
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.9e-15 86.7 161 46.0
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.9e-15 86.7 171 42.7
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.4e-15 86.3 174 45.4
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.2e-14 84.0 161 41.6
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 2.0e-14 83.2 164 40.2
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.0e-14 83.2 161 45.3
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.7e-14 82.8 157 45.2
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 2.7e-14 82.8 157 45.2
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 3.5e-14 82.4 161 45.3
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 3.5e-14 82.4 163 41.1
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 4.6e-14 82.0 179 38.0
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.6e-14 82.0 94 47.9
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 4.6e-14 82.0 172 38.4
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.0e-14 81.6 166 41.6
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 2.8e-11 72.8 168 36.9
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 4.7e-11 72.0 145 37.2
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 8.0e-11 71.2 163 36.2
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 3.1e-10 69.3 95 43.2
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.1e-10 69.3 97 46.4
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.1e-10 69.3 97 46.4
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.1e-10 69.3 97 46.4
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 4.0e-10 68.9 88 48.9
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 4.4e-09 65.5 147 37.4
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.3e-08 63.9 100 45.0
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.7e-08 63.5 96 44.8
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.7e-08 63.5 96 44.8
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.7e-08 62.4 78 48.7
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 1.4e-07 60.5 171 35.1
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-07 60.1 100 44.0
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-07 60.1 100 44.0
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.9e-07 60.1 100 44.0
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 2.4e-07 59.7 36 75.0
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 3.2e-07 59.3 93 43.0
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 4.1e-07 58.9 93 43.0
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-06 57.4 181 35.4
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.6e-06 57.0 84 44.0
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 1.6e-06 57.0 146 43.8


User provided reference genes

Program Settings