Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.3e-162 575.5 286 100.0
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 8.8e-162 573.5 286 99.3
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.4e-137 491.9 286 88.8
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 8.0e-131 470.7 287 79.8
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 9.8e-129 463.8 287 79.1
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 6.6e-125 451.1 287 75.3
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 1.5e-124 449.9 287 76.7
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 1.5e-124 449.9 282 77.0
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 2.8e-123 445.7 287 76.0
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 6.1e-123 444.5 287 76.3
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 2.6e-121 439.1 287 73.5
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 3.4e-121 438.7 287 74.2
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 4.4e-121 438.3 287 73.5
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 7.5e-121 437.6 287 73.2
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 1.3e-120 436.8 287 74.6
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.3e-120 436.8 287 74.6
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 3.7e-120 435.3 287 73.5
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.9e-120 434.9 287 73.9
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 6.4e-120 434.5 287 73.2
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 6.4e-120 434.5 285 73.7
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 2.4e-119 432.6 286 70.6
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 5.4e-119 431.4 287 71.8
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 5.9e-118 427.9 287 70.7
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 5.9e-118 427.9 287 70.7
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 5.9e-118 427.9 268 77.2
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 5.9e-118 427.9 288 72.6
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.0e-117 427.2 287 70.7
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.7e-117 426.4 286 72.7
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 3.9e-117 425.2 287 70.4
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 8.6e-117 424.1 285 72.3
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 1.5e-116 423.3 287 71.8
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 1.9e-116 422.9 287 70.7
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 7.3e-116 421.0 287 72.5
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 1.2e-115 420.2 284 71.5
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 1.6e-115 419.9 285 69.5
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 4.7e-115 418.3 284 70.4
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 1.2e-113 413.7 286 67.8
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 2.0e-113 412.9 287 69.7
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 2.0e-113 412.9 286 70.6
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 2.6e-113 412.5 286 71.3
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 3.4e-113 412.1 286 67.5
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 4.4e-113 411.8 286 71.0
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 4.4e-113 411.8 286 70.6
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 3.7e-112 408.7 286 67.1
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 4.9e-112 408.3 285 67.0
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 4.9e-112 408.3 286 65.7
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 6.4e-112 407.9 287 67.9
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 8.3e-112 407.5 286 66.1
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 1.4e-111 406.8 288 67.0
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.9e-111 406.4 284 68.0
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 3.2e-111 405.6 284 67.6
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 1.2e-110 403.7 284 67.6
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 2.0e-110 402.9 286 66.4
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 8.6e-109 397.5 283 68.9
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 2.8e-107 392.5 272 69.9
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 6.2e-107 391.3 246 76.0
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.1e-106 390.6 250 76.0
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 3.1e-106 389.0 232 82.8
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 5.2e-106 388.3 285 64.6
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.8e-106 387.9 246 76.8
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.2e-105 387.1 269 69.1
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 2.0e-105 386.3 284 67.6
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 9.8e-105 384.0 287 63.4
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 3.7e-104 382.1 237 77.2
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 1.1e-103 380.6 284 62.3
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 7.1e-103 377.9 234 76.9
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 4.6e-102 375.2 237 75.9
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 6.0e-102 374.8 286 62.2
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 6.6e-101 371.3 287 62.0
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 3.3e-100 369.0 287 61.0
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 3.6e-99 365.5 240 75.0
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 8.1e-99 364.4 231 76.2
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 3.1e-98 362.5 287 60.3
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 6.8e-98 361.3 287 61.0
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.2e-97 360.5 287 60.3
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.5e-97 360.1 246 67.9
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 4.4e-97 358.6 287 59.9
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 4.4e-97 358.6 287 59.2
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 5.8e-97 358.2 287 59.6
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 9.9e-97 357.5 287 59.6
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 4.9e-96 355.1 290 60.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 5.4e-95 351.7 232 72.4
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 2.1e-94 349.7 284 60.6
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 3.5e-94 349.0 279 59.9
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 9.6e-92 340.9 287 56.4
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 4.7e-91 338.6 208 77.9
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 1.1e-90 337.4 333 57.7
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 2.4e-90 336.3 208 76.0
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 5.2e-90 335.1 221 73.3
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 8.9e-90 334.3 287 57.5
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 3.4e-89 332.4 286 60.1
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 3.4e-89 332.4 288 55.6
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 4.9e-88 328.6 288 54.9
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 3.9e-85 318.9 218 69.7
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 8.7e-85 317.8 287 54.0
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.5e-84 316.2 289 58.5
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 2.8e-83 312.8 287 54.7
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 3.8e-80 302.4 248 60.1
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 9.3e-79 297.7 181 79.0
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 2.1e-78 296.6 291 51.9
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 6.9e-74 281.6 285 54.7
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 8.4e-72 274.6 205 66.3
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 2.5e-52 209.9 153 66.0
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 5.0e-48 195.7 113 80.5
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 1.5e-44 184.1 225 47.1
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.4e-42 177.6 199 49.7
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 3.1e-34 149.8 173 46.2
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 2.0e-33 147.1 95 76.8
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.6e-33 146.7 207 40.6
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 4.1e-26 122.9 212 35.8
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 1.2e-17 94.7 249 30.1
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 2.0e-17 94.0 174 35.6
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 6.1e-14 82.4 215 30.7
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.4e-13 81.3 197 32.5
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.2e-12 78.2 196 31.1
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 9.8e-12 75.1 196 31.1
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 1.7e-11 74.3 189 30.7
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 2.2e-11 73.9 196 30.1
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 2.2e-11 73.9 204 30.4
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 2.8e-11 73.6 188 30.9
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 3.7e-11 73.2 186 33.3
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 4.9e-11 72.8 186 33.3
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 1.4e-10 71.2 199 31.7
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 2.4e-10 70.5 183 30.6
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 3.1e-10 70.1 198 27.8
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 3.1e-10 70.1 195 28.7
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 4.1e-10 69.7 202 29.7
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 4.1e-10 69.7 202 29.7
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 1.6e-09 67.8 200 29.0
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 2.0e-09 67.4 156 32.1
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 2.7e-09 67.0 201 29.4
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 5.9e-09 65.9 181 28.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.8e-09 65.5 197 28.9
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 7.8e-09 65.5 156 30.8
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 1.3e-08 64.7 189 29.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.7e-08 64.3 185 29.2
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.3e-08 63.9 166 30.7
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 6.6e-08 62.4 156 29.5
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 1.5e-07 61.2 163 30.1
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 1.9e-07 60.8 154 32.5
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.9e-07 60.8 47 53.2
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 2.5e-07 60.5 47 57.4
Lalb_Chr06g0172791 Lupinus albus HOM05D006258 ORTHO05D007961 1.6e-06 57.8 224 24.1


User provided reference genes

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