Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014668 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 3.7e-90 334.7 153 100.0
vmacro10624 Vaccinium macrocarpon HOM05D003668 ORTHO05D004242 1.5e-14 83.6 44 88.6
Actinidia14944 Actinidia chinensis HOM05D003668 ORTHO05D004242 1.2e-11 73.9 35 91.4
CSS0008273 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 1.2e-11 73.9 35 91.4
Thecc.02G278000 Theobroma cacao HOM05D003668 ORTHO05D004242 1.2e-11 73.9 35 91.4
CSS0024119 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 2.0e-11 73.2 39 84.6
Gohir.A05G309600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 2.6e-11 72.8 35 88.6
Gohir.D05G310500 Gossypium hirsutum HOM05D003668 ORTHO05D004242 2.6e-11 72.8 35 88.6
Gorai.009G331400 Gossypium raimondii HOM05D003668 ORTHO05D004242 2.6e-11 72.8 35 88.6
Lalb_Chr02g0145561 Lupinus albus HOM05D003668 ORTHO05D004242 2.6e-11 72.8 35 88.6
COL.COLO4_20446 Corchorus olitorius HOM05D003668 ORTHO05D004242 3.4e-11 72.4 35 85.7
MBI05_g00408_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 3.4e-11 72.4 35 88.6
Potri.010G115700 Populus trichocarpa HOM05D003668 ORTHO05D004242 3.4e-11 72.4 35 85.7
Cpa.g.sc65.109 Carica papaya HOM05D003668 ORTHO05D004242 4.4e-11 72.0 35 88.6
Rhsim09G0101100 Rhododendron simsii HOM05D003668 ORTHO05D004242 4.4e-11 72.0 38 86.8
PGR102G1044 Punica granatum HOM05D003668 ORTHO05D004242 5.8e-11 71.6 35 85.7
QL01p002314 Quercus lobata HOM05D003668 ORTHO05D004242 5.8e-11 71.6 35 85.7
CiPaw.06G013800 Carya illinoinensis HOM05D003668 ORTHO05D004242 7.6e-11 71.2 35 85.7
Atru.chr11.362 Acer truncatum HOM05D003668 ORTHO05D004242 9.9e-11 70.9 35 85.7
Lalb_Chr21g0308541 Lupinus albus HOM05D003668 ORTHO05D004242 9.9e-11 70.9 35 88.6
Sabra08G0096100 Salix brachista HOM05D003668 ORTHO05D004242 9.9e-11 70.9 35 85.7
Sp2g12730 Schrenkiella parvula HOM05D003668 ORTHO05D004242 9.9e-11 70.9 35 82.9
AL5G10220 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
AT2G01270 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
arahy.Tifrunner.gnm1.ann1.P86RCB Arachis hypogaea HOM05D003668 ORTHO05D004242 1.3e-10 70.5 35 85.7
BcaB07g30412 Brassica carinata HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
BcaC03g17018 Brassica carinata HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
A02p31850 Brassica napus HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
C02p49290 Brassica napus HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
BolC2t11016H Brassica oleracea HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
BraA02t08194Z Brassica rapa HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
Carub.0005s0025 Capsella rubella HOM05D003668 ORTHO05D004242 1.3e-10 70.5 34 82.4
Ca_11103_v3 Cicer arietinum L. HOM05D003668 ORTHO05D004242 1.3e-10 70.5 35 82.9
Haze_11039 Corylus avellana HOM05D003668 ORTHO05D004242 1.3e-10 70.5 35 85.7
Glyma.20G124700 Glycine max HOM05D003668 ORTHO05D004242 1.3e-10 70.5 35 85.7
Lj5g0008039 Lotus japonicus HOM05D003668 ORTHO05D004242 1.3e-10 70.5 35 85.7
Phvul.007G035900 Phaseolus vulgaris HOM05D003668 ORTHO05D004242 1.3e-10 70.5 35 85.7
VMungo0720G2186 Vigna mungo HOM05D003668 ORTHO05D004242 1.3e-10 70.5 35 85.7
GSVIVG01011788001 Vitis vinifera HOM05D003668 ORTHO05D004242 1.3e-10 70.5 35 85.7
Glyma.10G265900 Glycine max HOM05D003668 ORTHO05D004242 1.7e-10 70.1 35 82.9
MBI10_g37695_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 1.7e-10 70.1 36 83.3
Sc11g0004080 Simmondsia chinensis HOM05D003668 ORTHO05D004242 1.7e-10 70.1 35 85.7
TAR622G1157 Trochodendron aralioides HOM05D003668 ORTHO05D004242 1.7e-10 70.1 35 85.7
COL.COLO4_20445 Corchorus olitorius HOM05D003668 ORTHO05D004242 2.2e-10 69.7 35 82.9
Dinv05883 Davidia involucrata HOM05D003668 ORTHO05D004242 2.2e-10 69.7 35 85.7
Lalb_Chr06g0165651 Lupinus albus HOM05D003668 ORTHO05D004242 2.2e-10 69.7 35 82.9
arahy.Tifrunner.gnm1.ann1.V9FAYY Arachis hypogaea HOM05D003668 ORTHO05D004242 2.9e-10 69.3 35 82.9
Thhalv10000862m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 2.9e-10 69.3 34 79.4
Lj3A875T61 Lonicera japonica HOM05D003668 ORTHO05D004242 2.9e-10 69.3 35 85.7
MD13G1028500 Malus domestica HOM05D003668 ORTHO05D004242 2.9e-10 69.3 35 82.9
Manes.14G135800 Manihot esculenta HOM05D003668 ORTHO05D004242 2.9e-10 69.3 35 80.0
MBI10_g41073_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 3.8e-10 68.9 33 87.9
Manes.06G062100 Manihot esculenta HOM05D003668 ORTHO05D004242 3.8e-10 68.9 35 80.0
Sp1g13410 Schrenkiella parvula HOM05D003668 ORTHO05D004242 3.8e-10 68.9 35 74.3
TWI31G1185 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 3.8e-10 68.9 35 82.9
A09p61640 Brassica napus HOM05D003668 ORTHO05D004242 4.9e-10 68.6 40 77.5
ClCG05G022250 Citrullus lanatus HOM05D003668 ORTHO05D004242 4.9e-10 68.6 36 83.3
Thhalv10007339m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 4.9e-10 68.6 35 80.0
Sabra10G0085600 Salix brachista HOM05D003668 ORTHO05D004242 4.9e-10 68.6 34 85.3
Sabra10G0087300 Salix brachista HOM05D003668 ORTHO05D004242 4.9e-10 68.6 34 85.3
TPR.G4938 Trifolium pratense HOM05D003668 ORTHO05D004242 4.9e-10 68.6 35 82.9
BcaB02g06567 Brassica carinata HOM05D003668 ORTHO05D004242 6.4e-10 68.2 35 77.1
BcaB02g06571 Brassica carinata HOM05D003668 ORTHO05D004242 6.4e-10 68.2 35 77.1
CAN.G1693.10 Capsicum annuum HOM05D003668 ORTHO05D004242 6.4e-10 68.2 35 82.9
MELO3C012298.2 Cucumis melo HOM05D003668 ORTHO05D004242 6.4e-10 68.2 35 82.9
CsaV3_5G034880 Cucumis sativus L. HOM05D003668 ORTHO05D004242 6.4e-10 68.2 35 82.9
Eucgr.B02887 Eucalyptus grandis HOM05D003668 ORTHO05D004242 6.4e-10 68.2 35 80.0
RcHm_v2.0_Chr4g0440821 Rosa chinensis HOM05D003668 ORTHO05D004242 6.4e-10 68.2 35 82.9
Sed0001529 Sechium edule HOM05D003668 ORTHO05D004242 6.4e-10 68.2 35 80.0
ATR0326G075 Amborella trichopoda HOM05D003668 ORTHO05D004242 8.4e-10 67.8 35 80.0
BcaC05g25439 Brassica carinata HOM05D003668 ORTHO05D004242 8.4e-10 67.8 35 77.1
A06p11040 Brassica napus HOM05D003668 ORTHO05D004242 8.4e-10 67.8 35 77.1
C05p13170 Brassica napus HOM05D003668 ORTHO05D004242 8.4e-10 67.8 35 77.1
BolC5t30053H Brassica oleracea HOM05D003668 ORTHO05D004242 8.4e-10 67.8 35 77.1
BraA06t24284Z Brassica rapa HOM05D003668 ORTHO05D004242 8.4e-10 67.8 35 77.1
Medtr1g108590 Medicago truncatula HOM05D003668 ORTHO05D004242 8.4e-10 67.8 40 75.0
Potri.008G127300 Populus trichocarpa HOM05D003668 ORTHO05D004242 8.4e-10 67.8 35 82.9
AL1G27090 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 1.1e-09 67.4 35 77.1
CiPaw.05G247100 Carya illinoinensis HOM05D003668 ORTHO05D004242 1.1e-09 67.4 35 82.9
Duzib268G0050 Durio zibethinus HOM05D003668 ORTHO05D004242 1.1e-09 67.4 35 80.0
Hma1.2p1_0114F.1_g055270 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 1.1e-09 67.4 35 80.0
Hma1.2p1_2887F.1_g329930 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 1.1e-09 67.4 35 80.0
Prupe.1G321800 Prunus persica HOM05D003668 ORTHO05D004242 1.1e-09 67.4 35 82.9
HPP92_020133 Vanilla planifolia HOM05D003668 ORTHO05D004242 1.1e-09 67.4 34 79.4
CANSAT01G1684 Cannabis sativa HOM05D003668 ORTHO05D004242 1.4e-09 67.0 35 77.1
TAR629G1414 Trochodendron aralioides HOM05D003668 ORTHO05D004242 1.4e-09 67.0 35 80.0
Cc11_g09050 Coffea canephora HOM05D003668 ORTHO05D004242 1.9e-09 66.6 35 82.9
Glyma.20G135000 Glycine max HOM05D003668 ORTHO05D004242 1.9e-09 66.6 35 80.0
Nn4g24060 Nelumbo nucifera HOM05D003668 ORTHO05D004242 1.9e-09 66.6 35 74.3
RcHm_v2.0_Chr3g0491751 Rosa chinensis HOM05D003668 ORTHO05D004242 1.9e-09 66.6 35 77.1
SHI16328 Sapria himalayana HOM05D003668 ORTHO05D004242 1.9e-09 66.6 34 82.4
Aa31LG2G8640 Aethionema arabicum HOM05D003668 ORTHO05D004242 2.4e-09 66.2 34 76.5
C08p45220 Brassica napus HOM05D003668 ORTHO05D004242 2.4e-09 66.2 40 75.0
Migut.E00406 Erythranthe guttata HOM05D003668 ORTHO05D004242 2.4e-09 66.2 35 80.0
BolC8t52070H Brassica oleracea HOM05D003668 ORTHO05D004242 3.2e-09 65.9 35 80.0
Carub.0001s1479 Capsella rubella HOM05D003668 ORTHO05D004242 3.2e-09 65.9 35 77.1
Psat6g222240 Pisum sativum HOM05D003668 ORTHO05D004242 3.2e-09 65.9 35 80.0
QL01p002329 Quercus lobata HOM05D000125 ORTHO05D000120 3.2e-09 65.9 37 81.1
TWI79G0359 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 3.2e-09 65.9 35 80.0
Aqoxy3G00162 Aquilegia oxysepala HOM05D003668 ORTHO05D004242 4.1e-09 65.5 35 74.3
CAN.G359.7 Capsicum annuum HOM05D003668 ORTHO05D004242 4.1e-09 65.5 35 80.0
AUR62014140 Chenopodium quinoa HOM05D003668 ORTHO05D004242 4.1e-09 65.5 35 74.3
AUR62041242 Chenopodium quinoa HOM05D003668 ORTHO05D004242 4.1e-09 65.5 35 74.3
AT1G15020 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 5.4e-09 65.1 35 74.3
MSTRG.884 Avicennia marina HOM05D003668 ORTHO05D004242 5.4e-09 65.1 35 71.4
Eucgr.B02885 Eucalyptus grandis HOM05D003668 ORTHO05D004242 5.4e-09 65.1 35 74.3
Gohir.A03G123600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 5.4e-09 65.1 35 77.1
Gohir.D02G146200 Gossypium hirsutum HOM05D003668 ORTHO05D004242 5.4e-09 65.1 35 77.1
Gorai.005G163600 Gossypium raimondii HOM05D003668 ORTHO05D004242 5.4e-09 65.1 35 77.1
SEGI_01615 Sequoiadendron giganteum HOM05D003668 ORTHO05D004242 5.4e-09 65.1 35 80.0
CARHR015560 Cardamine hirsuta HOM05D003668 ORTHO05D004242 7.1e-09 64.7 35 71.4
FvH4_4g32120 Fragaria vesca HOM05D003668 ORTHO05D004242 7.1e-09 64.7 35 74.3
FAN07G1823 Fragaria x ananassa HOM05D003668 ORTHO05D004242 7.1e-09 64.7 35 74.3
FAN12G3685 Fragaria x ananassa HOM05D003668 ORTHO05D004242 7.1e-09 64.7 35 74.3
FAN22G1857 Fragaria x ananassa HOM05D003668 ORTHO05D004242 7.1e-09 64.7 35 74.3
Oeu004307.1 Olea europaea HOM05D003668 ORTHO05D004242 9.2e-09 64.3 35 80.0
Peaxi162Scf00119g01535 Petunia axillaris HOM05D003668 ORTHO05D004242 9.2e-09 64.3 33 84.8
Ciclev10015050m.g Citrus clementina HOM05D003668 ORTHO05D004242 1.2e-08 63.9 35 80.0
Solyc04g007610.3 Solanum lycopersicum HOM05D003668 ORTHO05D004242 1.6e-08 63.5 35 77.1
Sopen04g002690 Solanum pennellii HOM05D003668 ORTHO05D004242 1.6e-08 63.5 35 77.1
Lsat_1_v5_gn_3_54180 Lactuca sativa HOM05D003668 ORTHO05D004242 2.1e-08 63.2 35 80.0
Oeu044332.1 Olea europaea HOM05D003668 ORTHO05D004242 2.1e-08 63.2 35 77.1
DCAR_007279 Daucus carota HOM05D003668 ORTHO05D004242 2.7e-08 62.8 44 63.6
EL10Ac6g14242 Beta vulgaris HOM05D003668 ORTHO05D004242 3.5e-08 62.4 32 81.2
Migut.L00756 Erythranthe guttata HOM05D003668 ORTHO05D004242 4.6e-08 62.0 35 68.6
Hma1.2p1_0114F.1_g055240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 4.6e-08 62.0 35 74.3
Hma1.2p1_0601F.1_g187240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 4.6e-08 62.0 35 74.3
Os05g0552500 Oryza sativa ssp. japonica HOM05D003668 ORTHO05D004242 4.6e-08 62.0 35 74.3
HanXRQChr08g0212821 Helianthus annuus HOM05D003668 ORTHO05D004242 6.0e-08 61.6 41 73.2
HanXRQChr15g0477351 Helianthus annuus HOM05D003668 ORTHO05D004242 6.0e-08 61.6 35 74.3
Zm00001eb295030 Zea mays HOM05D003668 ORTHO05D004242 6.0e-08 61.6 35 68.6
Nn3g18032 Nelumbo nucifera HOM05D003668 ORTHO05D004242 7.8e-08 61.2 40 67.5
PGSC0003DMG400005962 Solanum tuberosum HOM05D003668 ORTHO05D004242 7.8e-08 61.2 35 77.1
SGA_v2.0_scaffold50G18529 Striga asiatica HOM05D003668 ORTHO05D004242 7.8e-08 61.2 35 71.4
Lsat_1_v5_gn_8_42960 Lactuca sativa HOM05D003668 ORTHO05D004242 1.0e-07 60.8 34 76.5
PSO478G1788 Papaver somniferum HOM05D003668 ORTHO05D004242 1.0e-07 60.8 35 74.3
Psat0s3028g0080 Pisum sativum HOM05D003668 ORTHO05D004242 1.0e-07 60.8 30 86.7
Aa31LG1G80 Aethionema arabicum HOM05D003668 ORTHO05D004242 2.3e-07 59.7 35 71.4
Migut.L00659 Erythranthe guttata HOM05D003668 ORTHO05D004242 2.3e-07 59.7 35 65.7
Nitab4.5_0004092g0020 Nicotiana tabacum HOM05D003668 ORTHO05D004242 2.3e-07 59.7 32 81.2
Nitab4.5_0004692g0030 Nicotiana tabacum HOM05D003668 ORTHO05D004242 2.3e-07 59.7 32 81.2
Peaxi162Scf00205g00617 Petunia axillaris HOM05D003668 ORTHO05D004242 2.3e-07 59.7 35 71.4
SalBow8G3356 Salvia bowleyana HOM05D003668 ORTHO05D004242 2.3e-07 59.7 35 68.6
DCAR_030206 Daucus carota HOM05D003668 ORTHO05D004242 3.0e-07 59.3 35 71.4
Sed0014721 Sechium edule HOM05D003668 ORTHO05D004242 3.0e-07 59.3 30 83.3
ECA246G0677 Erigeron canadensis HOM05D003668 ORTHO05D004242 3.9e-07 58.9 32 78.1
PSO017G0236 Papaver somniferum HOM05D003668 ORTHO05D004242 5.1e-07 58.5 35 71.4
HanXRQChr15g0488541 Helianthus annuus HOM05D003668 ORTHO05D004242 6.6e-07 58.2 32 78.1
Pp3c20_23660 Physcomitrium patens HOM05D003668 ORTHO05D004242 3.3e-06 55.8 35 68.6
CDE06G0369 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 7.3e-06 54.7 35 62.9
Mapoly0013s0166 Marchantia polymorpha HOM05D003668 ORTHO05D004242 7.3e-06 54.7 30 66.7


User provided reference genes

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