Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 4.3e-89 331.3 161 100.0
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 9.6e-65 250.4 210 62.4
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.3e-61 240.0 210 60.5
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.2e-60 235.3 172 71.5
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.4e-60 234.6 208 58.7
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.9e-57 226.1 209 58.9
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.5e-57 225.7 210 57.6
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 6.2e-56 221.1 207 59.4
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.1e-55 220.3 212 57.1
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.4e-55 219.2 210 55.2
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 5.3e-55 218.0 186 61.8
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 1.2e-54 216.9 207 57.5
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 4.5e-54 214.9 207 55.6
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 9.9e-54 213.8 206 56.8
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 9.9e-54 213.8 207 55.6
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.7e-53 213.0 207 56.5
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 2.2e-53 212.6 206 55.8
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 3.8e-53 211.8 210 54.3
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 6.4e-53 211.1 207 58.0
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 8.4e-53 210.7 208 56.7
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.4e-52 209.9 207 55.6
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 2.4e-52 209.1 210 52.9
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 5.4e-52 208.0 214 55.1
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 5.4e-52 208.0 210 52.9
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 5.4e-52 208.0 207 54.1
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 9.3e-52 207.2 207 53.6
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 2.1e-51 206.1 212 55.7
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 2.1e-51 206.1 207 53.1
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 2.7e-51 205.7 207 54.1
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 2.7e-51 205.7 208 52.9
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 4.6e-51 204.9 210 52.4
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 3.0e-50 202.2 210 51.9
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 3.0e-50 202.2 207 51.7
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 6.7e-50 201.1 210 54.3
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 6.7e-50 201.1 212 52.8
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 6.7e-50 201.1 207 54.1
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.9e-49 199.5 209 53.6
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.3e-49 198.4 209 54.5
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 5.6e-49 198.0 211 55.0
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 7.4e-49 197.6 208 52.4
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 9.6e-49 197.2 208 51.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.3e-48 196.8 211 54.5
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 1.6e-48 196.4 208 51.0
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 2.1e-48 196.1 208 53.4
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 6.2e-48 194.5 207 50.2
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 8.1e-48 194.1 208 52.4
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 1.8e-47 193.0 212 51.4
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 2.4e-47 192.6 205 52.2
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 2.4e-47 192.6 225 50.2
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 2.4e-47 192.6 206 51.5
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 3.1e-47 192.2 206 52.9
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 3.1e-47 192.2 207 51.7
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 4.0e-47 191.8 212 51.4
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 2.0e-46 189.5 212 50.5
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.0e-46 189.5 212 50.9
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.6e-46 189.1 203 50.2
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 2.6e-46 189.1 210 51.4
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 3.4e-46 188.7 214 51.4
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 3.4e-46 188.7 213 50.7
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 4.5e-46 188.3 205 51.7
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 7.6e-46 187.6 210 51.0
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 9.9e-46 187.2 210 51.0
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.3e-45 186.8 187 56.1
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 2.2e-45 186.0 207 52.7
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.9e-45 185.7 209 49.8
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 2.9e-45 185.7 183 57.9
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 1.4e-44 183.3 187 54.0
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.4e-44 183.3 203 50.7
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 5.5e-44 181.4 206 51.0
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 7.1e-44 181.0 211 50.2
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 9.3e-44 180.6 208 50.5
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.6e-43 179.9 183 54.6
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 2.7e-43 179.1 218 50.0
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 7.9e-43 177.6 181 54.1
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.0e-42 177.2 210 48.6
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.8e-42 176.4 224 47.3
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 3.0e-42 175.6 197 49.7
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 3.0e-42 175.6 202 49.0
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 1.1e-41 173.7 181 55.8
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 3.3e-41 172.2 216 47.7
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 7.4e-41 171.0 188 51.6
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 2.8e-40 169.1 196 51.5
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 6.2e-40 167.9 207 47.3
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 1.4e-39 166.8 228 44.7
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.4e-39 166.8 183 49.7
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.8e-39 166.4 134 65.7
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 2.4e-39 166.0 187 51.9
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 5.3e-39 164.9 204 46.1
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 1.5e-38 163.3 184 52.2
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 7.6e-38 161.0 186 48.9
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.0e-37 160.6 193 49.2
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 2.2e-37 159.5 184 47.8
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.2e-37 159.5 200 47.5
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 2.9e-37 159.1 208 46.2
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 4.9e-37 158.3 199 49.2
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 4.9e-37 158.3 191 50.8
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 6.5e-37 157.9 184 48.9
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 6.5e-37 157.9 212 46.2
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 8.4e-37 157.5 180 49.4
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.1e-36 157.1 191 47.1
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 1.1e-36 157.1 188 51.1
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.4e-36 156.8 208 46.2
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 1.9e-36 156.4 218 43.6
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.9e-36 156.4 237 43.0
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.9e-36 156.4 189 49.2
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.9e-36 156.4 182 48.4
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.2e-36 155.6 205 44.4
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 4.2e-36 155.2 194 50.0
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.2e-36 155.2 202 44.6
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 5.5e-36 154.8 215 42.8
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 7.1e-36 154.5 187 48.7
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.6e-35 153.3 192 50.5
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.7e-35 152.5 205 43.9
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 2.7e-35 152.5 186 49.5
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.6e-35 151.8 194 44.3
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.0e-34 150.6 217 42.9
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.0e-34 150.6 205 45.9
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 1.8e-34 149.8 204 43.1
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 3.0e-34 149.1 205 43.9
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 3.9e-34 148.7 195 45.1
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 5.1e-34 148.3 227 41.4
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 8.7e-34 147.5 214 42.5
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 1.5e-33 146.7 191 44.0
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 1.9e-33 146.4 183 45.9
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 5.7e-33 144.8 196 44.4
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 5.7e-33 144.8 207 43.5
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 5.7e-33 144.8 209 41.1
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 7.4e-33 144.4 199 44.2
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.3e-32 143.7 186 44.6
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 2.2e-32 142.9 196 42.9
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 2.2e-32 142.9 196 42.9
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 3.7e-32 142.1 199 42.7
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 6.3e-32 141.4 208 42.3
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 1.4e-31 140.2 184 46.2
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.4e-31 139.4 200 43.0
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 3.1e-31 139.0 196 41.8
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 6.9e-31 137.9 191 43.5
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 9.0e-31 137.5 194 41.8
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 2.0e-30 136.3 210 44.8
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 3.4e-30 135.6 196 45.4
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 3.8e-29 132.1 174 46.0
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 8.5e-29 131.0 181 44.2
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 1.1e-28 130.6 184 41.8
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.6e-27 126.7 205 41.0
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 6.1e-27 124.8 175 42.9
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 1.3e-26 123.6 211 41.7
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.3e-26 123.6 211 41.7
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 2.3e-26 122.9 230 40.0
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 6.7e-26 121.3 220 36.4
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 1.5e-25 120.2 208 39.9
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 4.3e-25 118.6 207 43.0
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 6.3e-24 114.8 209 41.1
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 8.2e-24 114.4 172 40.1
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 2.4e-23 112.8 149 45.0
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 3.4e-22 109.0 170 38.8
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.2e-21 106.3 167 40.1
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.9e-21 105.9 180 38.3
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 3.8e-21 105.5 186 39.2
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 6.5e-21 104.8 234 33.3
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 5.5e-20 101.7 201 37.8
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 9.4e-20 100.9 225 35.6
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 6.7e-18 94.7 212 36.3
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 2.0e-17 93.2 205 35.6
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.1e-15 87.4 90 55.6
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.1e-15 87.4 58 74.1
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 2.2e-13 79.7 202 34.7
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 5.0e-13 78.6 87 48.3
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 2.5e-12 76.3 87 50.6
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 3.6e-11 72.4 89 47.2
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 6.1e-11 71.6 90 46.7
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 6.1e-11 71.6 89 47.2
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 8.0e-11 71.2 89 46.1
HPP92_002804 Vanilla planifolia HOM05D003947 ORTHO05D004614 9.7e-09 64.3 85 44.7
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.2e-06 57.4 59 49.2
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 2.0e-06 56.6 73 42.5
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 4.5e-06 55.5 46 54.3
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 4.5e-06 55.5 46 54.3
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 5.9e-06 55.1 60 50.0
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 7.7e-06 54.7 57 45.6


User provided reference genes

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