Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.2e-135 486.5 248 100.0
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.1e-96 357.1 249 81.5
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 1.1e-43 181.0 145 73.1
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.2e-43 179.5 142 71.8
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.3e-41 174.1 141 73.8
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.3e-39 167.5 145 66.9
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 6.2e-39 165.2 141 69.5
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 2.1e-31 140.2 116 70.7
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 1.4e-30 137.5 144 57.6
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.4e-30 136.7 118 66.1
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 9.0e-30 134.8 116 67.2
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 2.0e-29 133.7 136 58.8
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 2.0e-29 133.7 131 59.5
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 2.6e-29 133.3 134 57.5
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 5.8e-29 132.1 138 58.0
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 1.7e-28 130.6 136 58.8
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.9e-28 129.8 139 59.0
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 1.9e-27 127.1 134 60.4
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 2.5e-27 126.7 138 58.0
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 4.2e-27 125.9 133 57.1
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 4.2e-27 125.9 138 55.8
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 7.1e-27 125.2 147 57.1
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 9.3e-27 124.8 131 56.5
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 1.2e-26 124.4 124 59.7
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.2e-26 124.4 130 59.2
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 1.6e-26 124.0 138 55.1
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.1e-26 123.6 133 55.6
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.1e-26 123.6 133 55.6
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 2.7e-26 123.2 133 54.9
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 2.7e-26 123.2 138 56.5
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 3.5e-26 122.9 140 54.3
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 4.6e-26 122.5 130 56.9
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 4.6e-26 122.5 134 55.2
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 6.1e-26 122.1 130 56.2
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 6.1e-26 122.1 138 55.1
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 7.9e-26 121.7 137 54.7
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 7.9e-26 121.7 141 55.3
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 1.0e-25 121.3 139 53.2
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.8e-25 120.6 138 56.5
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 2.3e-25 120.2 139 55.4
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 2.3e-25 120.2 136 53.7
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 3.9e-25 119.4 138 54.3
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.1e-24 117.9 145 53.8
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 1.5e-24 117.5 137 52.6
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 2.5e-24 116.7 137 56.9
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 3.3e-24 116.3 124 55.6
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 3.3e-24 116.3 134 53.0
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 5.7e-24 115.5 137 53.3
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 7.4e-24 115.2 138 52.9
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 9.7e-24 114.8 114 57.9
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.6e-23 114.0 134 52.2
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 2.2e-23 113.6 139 50.4
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 4.8e-23 112.5 137 55.5
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 6.3e-23 112.1 144 51.4
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 8.2e-23 111.7 144 51.4
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 1.1e-22 111.3 139 50.4
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 1.1e-22 111.3 139 51.1
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 1.4e-22 110.9 137 52.6
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 3.1e-22 109.8 132 51.5
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 3.1e-22 109.8 137 52.6
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 4.1e-22 109.4 134 48.5
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 6.9e-22 108.6 136 52.9
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 9.0e-22 108.2 141 53.2
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 2.6e-21 106.7 145 49.7
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 3.4e-21 106.3 126 48.4
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 3.4e-21 106.3 139 49.6
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 5.9e-21 105.5 139 50.4
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.0e-20 104.8 128 50.0
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 1.3e-20 104.4 137 50.4
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 1.7e-20 104.0 137 51.8
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 2.9e-20 103.2 137 49.6
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.2e-18 97.8 106 55.7
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.2e-18 97.8 128 48.4
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.6e-18 97.4 127 46.5
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 2.7e-18 96.7 139 51.8
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 4.6e-18 95.9 129 48.8
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 6.1e-18 95.5 108 54.6
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 2.3e-17 93.6 144 44.4
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 3.0e-17 93.2 128 50.0
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 2.5e-16 90.1 135 48.9
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 7.4e-16 88.6 99 51.5
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 7.4e-16 88.6 107 54.2
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 9.7e-16 88.2 148 48.0
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 2.2e-15 87.0 86 55.8
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 2.8e-15 86.7 127 44.1
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 2.8e-15 86.7 116 48.3
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.7e-15 86.3 139 49.6
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 6.3e-15 85.5 112 49.1
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 8.2e-15 85.1 146 43.2
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 8.2e-15 85.1 86 54.7
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-14 84.7 138 49.3
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.4e-14 83.6 162 44.4
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 4.1e-14 82.8 134 44.0
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 6.9e-14 82.0 91 51.6
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 6.9e-14 82.0 91 51.6
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.2e-13 81.3 86 52.3
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 1.2e-13 81.3 148 41.2
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.6e-13 80.1 106 50.0
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 3.4e-13 79.7 100 51.0
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 4.5e-13 79.3 128 43.8
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 5.9e-13 79.0 86 51.2
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 5.9e-13 79.0 114 50.9
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 5.9e-13 79.0 138 44.9
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 5.9e-13 79.0 76 55.3
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 5.9e-13 79.0 139 40.3
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 1.0e-12 78.2 89 52.8
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.3e-12 77.8 148 43.9
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 1.7e-12 77.4 128 43.8
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 2.2e-12 77.0 107 48.6
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 6.5e-12 75.5 142 45.1
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 1.1e-11 74.7 84 50.0
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 1.9e-11 73.9 122 45.1
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 4.2e-11 72.8 178 36.5
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 4.2e-11 72.8 154 37.7
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 3.6e-10 69.7 59 61.0
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 3.6e-10 69.7 154 37.0
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 3.6e-10 69.7 80 53.8
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 6.1e-10 68.9 86 53.5
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 7.9e-10 68.6 89 49.4
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 7.9e-10 68.6 151 38.4
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.0e-09 68.2 106 47.2
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 1.4e-09 67.8 116 42.2
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 1.8e-09 67.4 111 36.9
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 2.3e-09 67.0 78 53.8
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 5.1e-09 65.9 155 36.1
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 8.8e-09 65.1 59 57.6
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 8.8e-09 65.1 69 52.2
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 2.0e-08 63.9 89 46.1
CSS0005407 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-08 63.9 121 36.4
PSO063G2671 Papaver somniferum HOM05D000509 ORTHO05D006393 2.6e-08 63.5 142 39.4
CSS0015726 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.3e-08 63.2 122 36.1
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 5.7e-08 62.4 118 39.8
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 1.3e-07 61.2 69 47.8
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 1.7e-07 60.8 176 35.2
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 6.3e-07 58.9 112 40.2
CSS0022804 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.3e-07 58.9 122 35.2
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 6.3e-07 58.9 87 46.0
CSS0004115 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-06 58.2 120 30.8
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 1.4e-06 57.8 87 49.4
CSS0030187 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.8e-06 57.4 145 29.7
Sc09g0004100 Simmondsia chinensis HOM05D000509 ORTHO05D006393 1.8e-06 57.4 98 37.8
CSS0007080 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.0e-06 55.5 144 28.5
CSS0018069 Camellia sinensis var. sinensis HOM05D019333 ORTHO05D000004 9.1e-06 55.1 109 39.4
PSO339G4277 Papaver somniferum HOM05D000509 ORTHO05D006393 9.1e-06 55.1 136 35.3


User provided reference genes

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