Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.3e-47 191.8 91 100.0
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 9.7e-22 106.7 77 64.9
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 4.5e-19 97.8 81 59.3
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 4.5e-19 97.8 71 63.4
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.3e-18 96.3 75 65.3
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.2e-18 95.5 74 66.2
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 6.5e-18 94.0 74 64.9
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.1e-17 93.2 71 59.2
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.1e-17 93.2 71 59.2
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.1e-17 93.2 71 59.2
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 2.5e-17 92.0 81 54.3
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 2.5e-17 92.0 73 56.2
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 7.2e-17 90.5 83 59.0
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.6e-16 89.4 70 61.4
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.1e-16 89.0 72 56.9
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.0e-15 86.7 70 60.0
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-15 86.3 70 55.7
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 1.4e-15 86.3 70 55.7
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 1.4e-15 86.3 76 57.9
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 2.5e-14 82.0 82 48.8
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.3e-14 81.3 52 67.3
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.3e-14 81.3 77 50.6
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 5.7e-14 80.9 77 49.4
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 5.7e-14 80.9 67 52.2
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 5.7e-14 80.9 67 52.2
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 5.7e-14 80.9 76 59.2
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 5.7e-14 80.9 70 54.3
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 7.4e-14 80.5 72 54.2
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 1.3e-13 79.7 86 50.0
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.7e-13 79.3 85 49.4
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.7e-13 79.3 75 54.7
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.2e-13 79.0 81 50.6
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 2.2e-13 79.0 77 49.4
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 2.8e-13 78.6 81 46.9
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.8e-13 78.6 74 47.3
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.8e-13 78.6 56 60.7
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 3.7e-13 78.2 81 50.6
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.8e-13 77.8 86 53.5
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 4.8e-13 77.8 70 48.6
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 4.8e-13 77.8 76 47.4
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 4.8e-13 77.8 77 46.8
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.1e-12 76.6 81 49.4
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.8e-12 75.9 81 48.1
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.8e-12 75.9 75 49.3
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 1.8e-12 75.9 82 46.3
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.8e-12 75.9 72 52.8
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.8e-12 75.9 72 52.8
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.8e-12 75.9 76 44.7
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 3.1e-12 75.1 82 48.8
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 3.1e-12 75.1 77 51.9
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 4.1e-12 74.7 71 50.7
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 5.3e-12 74.3 71 45.1
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 5.3e-12 74.3 55 54.5
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 9.1e-12 73.6 72 48.6
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 9.1e-12 73.6 69 49.3
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 1.2e-11 73.2 77 42.9
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 1.5e-11 72.8 70 47.1
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.5e-11 72.8 77 44.2
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.0e-11 72.4 55 52.7
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.0e-11 72.4 53 56.6
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.0e-11 72.4 83 48.2
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.4e-11 71.6 73 42.5
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 3.4e-11 71.6 73 42.5
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.4e-11 71.6 77 48.1
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 3.4e-11 71.6 78 50.0
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 7.7e-11 70.5 71 50.7
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.3e-10 69.7 83 43.4
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.7e-10 69.3 76 47.4
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 2.2e-10 68.9 67 47.8
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.9e-10 68.6 52 53.8
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 2.9e-10 68.6 52 53.8
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.8e-10 68.2 77 48.1
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 3.8e-10 68.2 51 58.8
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 3.8e-10 68.2 76 47.4
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 3.8e-10 68.2 68 51.5
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 8.5e-10 67.0 67 46.3
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.1e-09 66.6 70 40.0
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.4e-09 66.2 63 50.8
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.9e-09 65.9 69 43.5
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 3.2e-09 65.1 71 47.9
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 4.2e-09 64.7 68 47.1
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 5.5e-09 64.3 69 43.5
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.2e-09 63.9 75 48.0
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 7.2e-09 63.9 93 41.9
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.2e-09 63.9 84 42.9
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 7.2e-09 63.9 73 43.8
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.6e-08 62.8 37 64.9
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 2.1e-08 62.4 79 45.6
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 4.7e-08 61.2 53 49.1
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 4.7e-08 61.2 66 48.5
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.9e-08 60.5 38 55.3
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 2.3e-07 58.9 75 41.3
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 3.0e-07 58.5 72 38.9
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 3.0e-07 58.5 35 65.7
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.9e-07 58.2 71 42.3
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.9e-07 58.2 75 41.3
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 3.9e-07 58.2 71 40.8
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.7e-07 57.4 71 40.8
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.1e-06 56.6 78 38.5
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 1.5e-06 56.2 38 60.5
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 1.5e-06 56.2 84 42.9
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 2.6e-06 55.5 88 37.5
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 5.7e-06 54.3 38 52.6


User provided reference genes

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