Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014647 Camellia sinensis var. sinensis HOM05D012934 ORTHO05D028380 6.2e-76 287.3 142 100.0
CSS0029011 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D028380 8.8e-46 187.2 97 96.9
Aa31LG9G13820 Aethionema arabicum HOM05D000156 ORTHO05D003445 4.7e-07 58.5 54 57.4
vmacro18529 Vaccinium macrocarpon HOM05D000049 ORTHO05D001680 1.0e-06 57.4 39 71.8
Psat2g171640 Pisum sativum HOM05D000049 ORTHO05D001680 1.4e-06 57.0 43 67.4
TAR381G1139 Trochodendron aralioides HOM05D000049 ORTHO05D001680 2.3e-06 56.2 37 78.4
HanXRQChr12g0373021 Helianthus annuus HOM05D000049 ORTHO05D001680 3.0e-06 55.8 37 75.7
RhsimUnG0150500 Rhododendron simsii HOM05D000049 ORTHO05D001680 3.0e-06 55.8 35 80.0
Gorai.007G223900 Gossypium raimondii HOM05D000049 ORTHO05D001680 4.0e-06 55.5 36 77.8
Hma1.2p1_1059F.1_g253010 Hydrangea macrophylla HOM05D000049 ORTHO05D001680 5.2e-06 55.1 32 90.6
Sabra09G0067600 Salix brachista HOM05D000049 ORTHO05D001680 5.2e-06 55.1 47 66.0
Aa31LG7G10830 Aethionema arabicum HOM05D012934 ORTHO05D059717 6.8e-06 54.7 37 83.8
ATR1153G098 Amborella trichopoda HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
AagrBONN_evm.TU.Sc2ySwM_344.4165 Anthoceros agrestis HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
CSS0000278 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
CSS0007244 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
CAN.G1075.40 Capsicum annuum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
CAN.G775.8 Capsicum annuum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
CARHR280030 Cardamine hirsuta HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Cpa.g.sc106.43 Carica papaya HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Cfa004134 Carpinus fangiana HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Cfa004665 Carpinus fangiana HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
CDE04G3354 Ceratophyllum demersum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
CBR_g41810 Chara braunii HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
ClCG02G006870 Citrullus lanatus HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Ciclev10029604m.g Citrus clementina HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Cc07_g07120 Coffea canephora HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Haze_15280 Corylus avellana HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
MELO3C018523.2 Cucumis melo HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
CsaV3_7G007790 Cucumis sativus L. HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Duzib052G0536 Durio zibethinus HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Eucgr.I00699 Eucalyptus grandis HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
FvH4_2g03780 Fragaria vesca HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
FAN20G1205 Fragaria x ananassa HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
FAN24G0579 Fragaria x ananassa HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Gohir.A03G182200 Gossypium hirsutum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Gohir.A13G046900 Gossypium hirsutum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Gohir.D02G203900 Gossypium hirsutum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Gohir.D13G042800 Gossypium hirsutum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Gorai.005G231000 Gossypium raimondii HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Gorai.013G050700 Gossypium raimondii HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
MBI16_g23888_MAGBIO Magnolia biondii HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
MD05G1101000 Malus domestica HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Manes.07G059700 Manihot esculenta HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Manes.10G083600 Manihot esculenta HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Mapoly0129s0042 Marchantia polymorpha HOM05D000049 ORTHO05D001680 6.8e-06 54.7 36 77.8
Nn1g04549 Nelumbo nucifera HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Nitab4.5_0000036g0060 Nicotiana tabacum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Nitab4.5_0000142g0090 Nicotiana tabacum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Nitab4.5_0004025g0040 Nicotiana tabacum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Nitab4.5_0010836g0010 Nicotiana tabacum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Oeu054202.1 Olea europaea HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Peaxi162Scf00548g00510 Petunia axillaris HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Phvul.003G234800 Phaseolus vulgaris HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Pp3c26_13440 Physcomitrium patens HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Pp3c6_23830 Physcomitrium patens HOM05D000049 ORTHO05D001680 6.8e-06 54.7 36 77.8
Potri.009G087400 Populus trichocarpa HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Prupe.8G145900 Prunus persica HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
QL11p030375 Quercus lobata HOM05D000049 ORTHO05D001680 6.8e-06 54.7 51 60.8
Rhsim11G0152700 Rhododendron simsii HOM05D000049 ORTHO05D001680 6.8e-06 54.7 37 75.7
RcHm_v2.0_Chr6g0252801 Rosa chinensis HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Sabra16G0183100 Salix brachista HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Sed0020774 Sechium edule HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Sed0027258 Sechium edule HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Hund13954 Selenicereus undatus HOM05D000049 ORTHO05D001680 6.8e-06 54.7 42 66.7
SEGI_41345 Sequoiadendron giganteum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Solyc02g064640.4 Solanum lycopersicum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Solyc02g092330.3 Solanum lycopersicum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Sopen02g014740 Solanum pennellii HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
Sopen02g036890 Solanum pennellii HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
PGSC0003DMG400003319 Solanum tuberosum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
PGSC0003DMG400021443 Solanum tuberosum HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
SGA_v2.0_scaffold72G24072 Striga asiatica HOM05D000049 ORTHO05D001680 6.8e-06 54.7 34 82.4
Thecc.02G117600 Theobroma cacao HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
VMungo0251G0777 Vigna mungo HOM05D000049 ORTHO05D001680 6.8e-06 54.7 31 90.3
GSVIVG01037822001 Vitis vinifera HOM05D000049 ORTHO05D001680 6.8e-06 54.7 36 77.8
Actinidia36430 Actinidia chinensis HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Aa31LG1G16110 Aethionema arabicum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Aa31LG4G18320 Aethionema arabicum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Ah.02g125390 Amaranthus hybridus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Aqoxy6G02604 Aquilegia oxysepala HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
AL5G29880 Arabidopsis lyrata HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
AT5G67560 Arabidopsis thaliana HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
arahy.Tifrunner.gnm1.ann1.RLIZ91 Arachis hypogaea HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
arahy.Tifrunner.gnm1.ann1.T9WNCM Arachis hypogaea HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 8.9e-06 54.3 39 66.7
MSTRG.23669 Avicennia marina HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
MSTRG.2817 Avicennia marina HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
EL10Ac6g15615 Beta vulgaris HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BcaB02g09913 Brassica carinata HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BcaB04g20044 Brassica carinata HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BcaB04g20045 Brassica carinata HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
A03p47560 Brassica napus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
A06p32860 Brassica napus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
A09p09270 Brassica napus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
A09p65340 Brassica napus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 32 75.0
C03p59610 Brassica napus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
C07p45550 Brassica napus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
C09p10830 Brassica napus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BolC3t18224H Brassica oleracea HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BolC3t19801H Brassica oleracea HOM05D012934 ORTHO05D014825 8.9e-06 54.3 91 36.3
BolC7t45076H Brassica oleracea HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BraA03t13870Z Brassica rapa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BraA06t26218Z Brassica rapa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BraA09t36580Z Brassica rapa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
BraA09t41880Z Brassica rapa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 32 75.0
CSS0012425 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
CSS0048650 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Carub.0005s1623 Capsella rubella HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Carub.0008s2691 Capsella rubella HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
CARHR158950 Cardamine hirsuta HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Cpa.g.sc6.13 Carica papaya HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
CiPaw.01G004200 Carya illinoinensis HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
CiPaw.02G002300 Carya illinoinensis HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
CiPaw.05G018300 Carya illinoinensis HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Ca_24690_v3 Cicer arietinum L. HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Ciclev10026580m.g Citrus clementina HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Haze_10263 Corylus avellana HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Dinv04046 Davidia involucrata HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Duzib138G1753 Durio zibethinus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Duzib147G1294 Durio zibethinus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Duzib187G1004 Durio zibethinus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Duzib264G1021 Durio zibethinus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Migut.H00345 Erythranthe guttata HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Thhalv10004984m.g Eutrema salsugineum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Thhalv10010752m.g Eutrema salsugineum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
FvH4_1g17760 Fragaria vesca HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
FAN19G0907 Fragaria x ananassa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
FAN23G0657 Fragaria x ananassa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
FAN26G1862 Fragaria x ananassa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
FAN28G1585 Fragaria x ananassa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Glyma.01G194500 Glycine max HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Glyma.11G047400 Glycine max HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Gohir.A02G151300 Gossypium hirsutum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Gohir.A11G214700 Gossypium hirsutum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Gohir.D03G029000 Gossypium hirsutum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Gohir.D11G208700 Gossypium hirsutum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Gorai.003G030700 Gossypium raimondii HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
HanXRQChr11g0323121 Helianthus annuus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
HanXRQChr15g0472601 Helianthus annuus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Hma1.2p1_0852F.1_g228540 Hydrangea macrophylla HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Lsat_1_v5_gn_2_82701 Lactuca sativa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Lsat_1_v5_gn_3_86821 Lactuca sativa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Lsat_1_v5_gn_4_161601 Lactuca sativa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Lj2g0007542 Lotus japonicus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Lalb_Chr05g0213721 Lupinus albus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Lalb_Chr09g0323621 Lupinus albus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
MD02G1186600 Malus domestica HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
MD15G1297800 Malus domestica HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Manes.12G115000 Manihot esculenta HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Medtr5g015370 Medicago truncatula HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Nn5g30597 Nelumbo nucifera HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
PSO017G1040 Papaver somniferum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
PSO170G0616 Papaver somniferum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Phvul.002G010400 Phaseolus vulgaris HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Potri.001G293100 Populus trichocarpa HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
PRCOL_00003756 Prasinoderma coloniale HOM05D000049 ORTHO05D001680 8.9e-06 54.3 33 81.8
Prupe.6G220000 Prunus persica HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
PGR102G0589 Punica granatum HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
QL06p039555 Quercus lobata HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Rhsim10G0099400 Rhododendron simsii HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
RcHm_v2.0_Chr2g0108091 Rosa chinensis HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Sp5g12240 Schrenkiella parvula HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Hund16402 Selenicereus undatus HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Sc03g0002400 Simmondsia chinensis HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
SGA_v2.0_scaffold45G17166 Striga asiatica HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
THA.LOC104821205 Tarenaya hassleriana HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
THA.LOC104823839 Tarenaya hassleriana HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
THA.LOC104827644 Tarenaya hassleriana HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
Thecc.01G073000 Theobroma cacao HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
TPR.G21853 Trifolium pratense HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
TWI09G0457 Tripterygium wilfordii HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
TWI53G0296 Tripterygium wilfordii HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
TWI73G0833 Tripterygium wilfordii HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
TAR625G0098 Trochodendron aralioides HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
TAR628G0907 Trochodendron aralioides HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
vmacro05411 Vaccinium macrocarpon HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
HPP92_020410 Vanilla planifolia HOM05D000049 ORTHO05D001680 8.9e-06 54.3 61 49.2
VMungo1215G1432 Vigna mungo HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1
GSVIVG01002075001 Vitis vinifera HOM05D000049 ORTHO05D001680 8.9e-06 54.3 31 87.1


User provided reference genes

Program Settings