Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014635 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D033910 7.5e-36 153.3 76 100.0
CSS0008999 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.1e-31 139.4 81 88.9
CSS0000758 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.3e-31 137.9 80 90.0
CSS0000638 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.6e-30 135.6 80 88.8
CSS0006566 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 2.8e-30 134.8 80 88.8
CiPaw.12G035900 Carya illinoinensis HOM05D003221 ORTHO05D004432 4.7e-30 134.0 81 86.4
CSS0035074 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 6.2e-30 133.7 80 87.5
EL10Ac7g18076 Beta vulgaris HOM05D003221 ORTHO05D004432 1.1e-29 132.9 81 85.2
Gohir.A03G062400 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.8e-29 132.1 81 85.2
AUR62025726 Chenopodium quinoa HOM05D003221 ORTHO05D004432 2.3e-29 131.7 81 84.0
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 2.3e-29 131.7 81 85.2
Lalb_Chr23g0273491 Lupinus albus HOM05D003221 ORTHO05D004432 2.3e-29 131.7 81 85.2
Rhsim08G0185100 Rhododendron simsii HOM05D003221 ORTHO05D004432 3.1e-29 131.3 81 84.0
Ca_05563_v3 Cicer arietinum L. HOM05D003221 ORTHO05D004432 4.0e-29 131.0 81 84.0
vmacro19238 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 4.0e-29 131.0 81 84.0
Gohir.D03G103700 Gossypium hirsutum HOM05D003221 ORTHO05D004432 5.2e-29 130.6 81 84.0
Gorai.003G109300 Gossypium raimondii HOM05D003221 ORTHO05D004432 5.2e-29 130.6 81 84.0
Lalb_Chr07g0183231 Lupinus albus HOM05D003221 ORTHO05D004432 5.2e-29 130.6 81 82.7
Potri.012G093500 Populus trichocarpa HOM05D003221 ORTHO05D004432 5.2e-29 130.6 81 84.0
Hund05648 Selenicereus undatus HOM05D003221 ORTHO05D004432 5.2e-29 130.6 81 82.7
MSTRG.22924 Avicennia marina HOM05D003221 ORTHO05D004432 6.8e-29 130.2 81 84.0
Cfa018890 Carpinus fangiana HOM05D003221 ORTHO05D004432 6.8e-29 130.2 81 84.0
Gohir.A12G188100 Gossypium hirsutum HOM05D003221 ORTHO05D004432 6.8e-29 130.2 81 84.0
Gohir.D12G190900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 6.8e-29 130.2 81 84.0
Gorai.008G204800 Gossypium raimondii HOM05D003221 ORTHO05D004432 6.8e-29 130.2 81 84.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 6.8e-29 130.2 81 84.0
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 8.9e-29 129.8 81 82.7
Ciclev10020559m.g Citrus clementina HOM05D003221 ORTHO05D004432 8.9e-29 129.8 81 84.0
PGR083G1499 Punica granatum HOM05D003221 ORTHO05D004432 8.9e-29 129.8 81 81.5
Thecc.03G123100 Theobroma cacao HOM05D003221 ORTHO05D004432 8.9e-29 129.8 81 84.0
MELO3C002335.2 Cucumis melo HOM05D003221 ORTHO05D004432 1.2e-28 129.4 81 82.7
CsaV3_1G009320 Cucumis sativus L. HOM05D003221 ORTHO05D004432 1.2e-28 129.4 81 82.7
Lj5g0004669 Lotus japonicus HOM05D003221 ORTHO05D004432 1.2e-28 129.4 81 84.0
Lalb_Chr08g0236971 Lupinus albus HOM05D003221 ORTHO05D004432 1.2e-28 129.4 81 84.0
SGA_v2.0_scaffold350G49637 Striga asiatica HOM05D003221 ORTHO05D004432 1.2e-28 129.4 81 84.0
TPR.G37528 Trifolium pratense HOM05D003221 ORTHO05D004432 1.2e-28 129.4 81 82.7
Glyma.17G127100 Glycine max HOM05D003221 ORTHO05D004432 1.5e-28 129.0 81 84.0
Lj4g0007668 Lotus japonicus HOM05D003221 ORTHO05D004432 1.5e-28 129.0 81 82.7
Manes.06G115400 Manihot esculenta HOM05D003221 ORTHO05D004432 1.5e-28 129.0 81 84.0
Ah.08g218090 Amaranthus hybridus HOM05D003221 ORTHO05D004432 2.0e-28 128.6 81 82.7
CANSAT80G0340 Cannabis sativa HOM05D003221 ORTHO05D004432 2.0e-28 128.6 81 82.7
Psat4g064960 Pisum sativum HOM05D003221 ORTHO05D004432 2.0e-28 128.6 81 82.7
TPR.G16844 Trifolium pratense HOM05D003221 ORTHO05D004432 2.0e-28 128.6 81 82.7
unitig_747.g21330 Utricularia gibba HOM05D003221 ORTHO05D004432 2.0e-28 128.6 81 80.2
Actinidia16191 Actinidia chinensis HOM05D003221 ORTHO05D004432 2.6e-28 128.3 81 82.7
HPP92_024646 Vanilla planifolia HOM05D003221 ORTHO05D004432 2.6e-28 128.3 81 82.7
Actinidia25611 Actinidia chinensis HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 82.7
Migut.I00477 Erythranthe guttata HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 81.5
Eucgr.I00301 Eucalyptus grandis HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 79.0
Eucgr.K02756 Eucalyptus grandis HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 80.2
MD06G1151500 Malus domestica HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 82.7
MD14G1163300 Malus domestica HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 82.7
Phvul.003G208200 Phaseolus vulgaris HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 84.0
Potri.015G090900 Populus trichocarpa HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 82.7
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 81.5
Sc04g0000950 Simmondsia chinensis HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 81.5
GSVIVG01007538001 Vitis vinifera HOM05D003221 ORTHO05D004432 3.4e-28 127.9 81 82.7
Dinv11105 Davidia involucrata HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 82.7
FvH4_3g25540 Fragaria vesca HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 82.7
FAN11G1198 Fragaria x ananassa HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 82.7
Glyma.05G044500 Glycine max HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 82.7
Manes.14G055233 Manihot esculenta HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 82.7
Oeu033323.1 Olea europaea HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 80.2
RcHm_v2.0_Chr7g0191061 Rosa chinensis HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 82.7
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 80.2
Solyc07g009140.3 Solanum lycopersicum HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 81.5
Sopen07g017130 Solanum pennellii HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 81.5
TWI39G0859 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 81.5
VMungo1215G0589 Vigna mungo HOM05D003221 ORTHO05D004432 4.4e-28 127.5 81 82.7
Atru.chr9.1015 Acer truncatum HOM05D003221 ORTHO05D004432 5.8e-28 127.1 81 82.7
Duzib068G0069 Durio zibethinus HOM05D003221 ORTHO05D004432 5.8e-28 127.1 81 82.7
Duzib084G0381 Durio zibethinus HOM05D003221 ORTHO05D004432 5.8e-28 127.1 81 82.7
SalBow5G2462 Salvia bowleyana HOM05D003221 ORTHO05D004432 5.8e-28 127.1 81 82.7
TAR371G1119 Trochodendron aralioides HOM05D003221 ORTHO05D004432 5.8e-28 127.1 81 82.7
Dinv38467 Davidia involucrata HOM05D003221 ORTHO05D004432 7.5e-28 126.7 81 82.7
Duzib205G0731 Durio zibethinus HOM05D003221 ORTHO05D004432 7.5e-28 126.7 81 80.2
TWI14G1333 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 7.5e-28 126.7 81 81.5
FAN16G0231 Fragaria x ananassa HOM05D003221 ORTHO05D004432 9.8e-28 126.3 81 81.5
FAN21G3720 Fragaria x ananassa HOM05D003221 ORTHO05D004432 9.8e-28 126.3 81 81.5
FAN25G3633 Fragaria x ananassa HOM05D003221 ORTHO05D004432 9.8e-28 126.3 81 81.5
Os04g0485000 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 9.8e-28 126.3 81 79.0
Prupe.5G156700 Prunus persica HOM05D003221 ORTHO05D004432 9.8e-28 126.3 81 81.5
CAN.G990.4 Capsicum annuum HOM05D003221 ORTHO05D004432 1.3e-27 125.9 81 80.2
PGSC0003DMG402024210 Solanum tuberosum HOM05D003221 ORTHO05D004432 1.3e-27 125.9 81 80.2
Ah.15g095310 Amaranthus hybridus HOM05D003221 ORTHO05D004432 1.7e-27 125.6 81 81.5
Aqoxy1G01463 Aquilegia oxysepala HOM05D003221 ORTHO05D004432 1.7e-27 125.6 81 80.2
Glyma.05G044900 Glycine max HOM05D003221 ORTHO05D004432 1.7e-27 125.6 81 82.7
SEGI_11838 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 1.7e-27 125.6 81 82.7
SEGI_32179 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 1.7e-27 125.6 81 82.7
ATR0681G172 Amborella trichopoda HOM05D003221 ORTHO05D004432 2.2e-27 125.2 81 81.5
MBI11_g19363_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 2.2e-27 125.2 81 81.5
Nitab4.5_0000366g0070 Nicotiana tabacum HOM05D003221 ORTHO05D004432 2.2e-27 125.2 81 79.0
Nitab4.5_0006219g0010 Nicotiana tabacum HOM05D003221 ORTHO05D004432 2.2e-27 125.2 81 79.0
QL05p040991 Quercus lobata HOM05D003221 ORTHO05D004432 2.2e-27 125.2 81 81.5
ATR0824G170 Amborella trichopoda HOM05D003221 ORTHO05D004432 2.9e-27 124.8 81 79.0
CDE04G0976 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 2.9e-27 124.8 81 79.0
PSO063G7046 Papaver somniferum HOM05D003221 ORTHO05D004432 2.9e-27 124.8 81 80.2
PSO170G4862 Papaver somniferum HOM05D003221 ORTHO05D004432 2.9e-27 124.8 81 80.2
PSO445G0024 Papaver somniferum HOM05D003221 ORTHO05D004432 2.9e-27 124.8 81 80.2
PSO782G0707 Papaver somniferum HOM05D003221 ORTHO05D004432 2.9e-27 124.8 81 80.2
Sabra15G0113000 Salix brachista HOM05D003221 ORTHO05D004432 2.9e-27 124.8 81 81.5
arahy.Tifrunner.gnm1.ann1.BX07LP Arachis hypogaea HOM05D003221 ORTHO05D004432 3.7e-27 124.4 81 81.5
arahy.Tifrunner.gnm1.ann1.UKG7ME Arachis hypogaea HOM05D003221 ORTHO05D004432 3.7e-27 124.4 81 81.5
MSTRG.4587 Avicennia marina HOM05D003221 ORTHO05D004432 3.7e-27 124.4 81 81.5
Hma1.2p1_0046F.1_g027520 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 3.7e-27 124.4 81 80.2
Oeu011575.1 Olea europaea HOM05D003221 ORTHO05D004432 3.7e-27 124.4 81 79.0
Os02g0600100 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 3.7e-27 124.4 81 76.5
Peaxi162Scf00324g00334 Petunia axillaris HOM05D003221 ORTHO05D004432 3.7e-27 124.4 81 77.8
Zm00001eb246330 Zea mays HOM05D003221 ORTHO05D004432 3.7e-27 124.4 81 76.5
Lsat_1_v5_gn_4_78821 Lactuca sativa HOM05D003221 ORTHO05D004432 4.9e-27 124.0 81 80.2
Nn3g16577 Nelumbo nucifera HOM05D003221 ORTHO05D004432 4.9e-27 124.0 81 79.0
Aa31LG7G11020 Aethionema arabicum HOM05D003221 ORTHO05D004432 6.4e-27 123.6 81 79.0
Cc04_g10290 Coffea canephora HOM05D003221 ORTHO05D004432 6.4e-27 123.6 81 81.5
Lj5A100G57 Lonicera japonica HOM05D003221 ORTHO05D004432 6.4e-27 123.6 81 80.2
MBI06_g43853_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 6.4e-27 123.6 81 81.5
QL10p005036 Quercus lobata HOM05D003221 ORTHO05D004432 6.4e-27 123.6 81 79.0
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 8.3e-27 123.2 81 79.0
Hma1.2p1_0209F.1_g088430 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 8.3e-27 123.2 81 79.0
Nn4g22458 Nelumbo nucifera HOM05D003221 ORTHO05D004432 8.3e-27 123.2 81 77.8
Zm00001eb079270 Zea mays HOM05D003221 ORTHO05D004432 8.3e-27 123.2 81 77.8
AL7G28360 Arabidopsis lyrata HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
AT4G24820 Arabidopsis thaliana HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BcaB03g12449 Brassica carinata HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BcaC06g32856 Brassica carinata HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BcaC07g38153 Brassica carinata HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BcaNung07243 Brassica carinata HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
A01p16130 Brassica napus HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
A03p55560 Brassica napus HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
C07p53800 Brassica napus HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BolC7t45870H Brassica oleracea HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BraA01t01549Z Brassica rapa HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BraA03t14625Z Brassica rapa HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
BraA08t34085Z Brassica rapa HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
Carub.0007s1623 Capsella rubella HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
CARHR232220 Cardamine hirsuta HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
DCAR_027511 Daucus carota HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 80.2
Thhalv10025431m.g Eutrema salsugineum HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
HanXRQChr09g0272871 Helianthus annuus HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 79.0
Lj9A475T64 Lonicera japonica HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 80.2
Sp7g22810 Schrenkiella parvula HOM05D003221 ORTHO05D004432 1.1e-26 122.9 81 77.8
Gohir.D09G245900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.4e-26 122.5 81 80.2
Gorai.006G270400 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.4e-26 122.5 81 80.2
THA.LOC104825005 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 1.4e-26 122.5 81 80.2
TAR626G0734 Trochodendron aralioides HOM05D003221 ORTHO05D004432 1.4e-26 122.5 81 79.0
C01p20120 Brassica napus HOM05D003221 ORTHO05D004432 1.9e-26 122.1 81 77.8
BolC1t01941H Brassica oleracea HOM05D003221 ORTHO05D004432 1.9e-26 122.1 81 77.8
HanXRQChr16g0497921 Helianthus annuus HOM05D003221 ORTHO05D004432 2.4e-26 121.7 81 77.8
QL10p005029 Quercus lobata HOM05D003221 ORTHO05D004432 2.4e-26 121.7 81 77.8
Medtr4g104080 Medicago truncatula HOM05D003221 ORTHO05D004432 4.1e-26 120.9 81 79.0
THA.LOC104811603 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 4.1e-26 120.9 81 80.2
CSS0004138 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 9.2e-26 119.8 70 88.6
Gohir.A09G245000 Gossypium hirsutum HOM05D003221 ORTHO05D004432 9.2e-26 119.8 81 77.8
CDE07G0656 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 2.0e-25 118.6 78 76.9
SHI33980 Sapria himalayana HOM05D003221 ORTHO05D004432 2.0e-25 118.6 81 77.8
AagrBONN_evm.TU.Sc2ySwM_344.2231 Anthoceros agrestis HOM05D003221 ORTHO05D004432 2.7e-25 118.2 81 77.8
Mapoly0014s0216 Marchantia polymorpha HOM05D003221 ORTHO05D004432 7.8e-25 116.7 81 76.5
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 3.0e-24 114.8 81 71.6
CSS0042115 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.9e-24 114.4 75 80.0
Pp3c12_14600 Physcomitrium patens HOM05D003221 ORTHO05D004432 6.6e-24 113.6 81 74.1
Medtr8g464820 Medicago truncatula HOM05D003221 ORTHO05D004432 1.5e-23 112.5 81 76.5
Pp3c10_7470 Physcomitrium patens HOM05D003221 ORTHO05D004432 4.3e-23 110.9 81 70.4
CBR_g40800 Chara braunii HOM05D003221 ORTHO05D004432 5.6e-23 110.5 81 69.1
MBI06_g05239_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 5.6e-23 110.5 76 80.3
AagrBONN_evm.TU.Sc2ySwM_228.4449 Anthoceros agrestis HOM05D003221 ORTHO05D004432 8.1e-22 106.7 110 56.4
CARHR238350 Cardamine hirsuta HOM05D003221 ORTHO05D004432 1.2e-20 102.8 82 70.7
Cpa.g.sc4.74 Carica papaya HOM05D003221 ORTHO05D004432 1.0e-16 89.7 61 82.0
Medtr8g046560 Medicago truncatula HOM05D003221 ORTHO05D004432 5.1e-16 87.4 62 80.6
CAN.G5443.1 Capsicum annuum HOM05D003221 ORTHO05D004432 1.2e-14 82.8 46 91.3
CiPaw.11G011900 Carya illinoinensis HOM05D003221 ORTHO05D004432 4.7e-14 80.9 47 89.4
PRCOL_00002590 Prasinoderma coloniale HOM05D003221 ORTHO05D004432 4.0e-13 77.8 80 46.2
RcHm_v2.0_Chr5g0017921 Rosa chinensis HOM05D003221 ORTHO05D033910 5.2e-13 77.4 46 87.0
RcHm_v2.0_Chr5g0065961 Rosa chinensis HOM05D003221 ORTHO05D033910 5.2e-13 77.4 46 87.0
MCO04G155 Micromonas commoda HOM05D003221 ORTHO05D004432 1.3e-11 72.8 83 45.8
Cre13.g581450 Chlamydomonas reinhardtii HOM05D003221 ORTHO05D004432 5.4e-10 67.4 79 43.0
AUR62001280 Chenopodium quinoa HOM05D003221 ORTHO05D004432 4.6e-09 64.3 43 76.7
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 1.3e-08 62.8 81 44.4
FvH4_5g07531 Fragaria vesca HOM05D003221 ORTHO05D016847 1.7e-08 62.4 33 81.8
vmacro01936 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 6.6e-08 60.5 46 69.6
Gohir.D02G137350 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.5e-07 59.3 40 67.5
Gorai.005G153700 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.5e-07 59.3 31 83.9
FAN13G1328 Fragaria x ananassa HOM05D003221 ORTHO05D016847 1.6e-06 55.8 67 53.7


User provided reference genes

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