Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.1e-111 404.8 216 100.0
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.0e-29 134.4 138 56.5
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 1.3e-29 134.0 138 56.5
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 3.0e-29 132.9 138 55.1
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 5.1e-29 132.1 138 55.1
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 8.7e-29 131.3 164 50.6
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 1.9e-28 130.2 164 49.4
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 1.9e-28 130.2 138 54.3
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.5e-28 129.8 164 50.0
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 3.3e-28 129.4 164 50.0
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.3e-28 129.0 164 50.6
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.3e-28 129.0 164 50.6
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 5.6e-28 128.6 138 55.8
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 5.6e-28 128.6 138 53.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 5.6e-28 128.6 138 55.1
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 7.4e-28 128.3 164 49.4
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 7.4e-28 128.3 164 48.8
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 7.4e-28 128.3 164 48.8
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 9.6e-28 127.9 138 55.8
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 1.3e-27 127.5 138 53.6
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.6e-27 127.1 138 55.1
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 1.6e-27 127.1 164 48.8
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 2.1e-27 126.7 138 55.1
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 2.8e-27 126.3 138 52.9
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 2.8e-27 126.3 138 54.3
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 2.8e-27 126.3 138 53.6
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 2.8e-27 126.3 138 55.8
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 3.6e-27 125.9 138 53.6
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.8e-27 125.6 127 56.7
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 6.2e-27 125.2 138 53.6
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 6.2e-27 125.2 138 53.6
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 8.1e-27 124.8 138 52.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 8.1e-27 124.8 164 49.4
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 8.1e-27 124.8 138 55.1
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 1.1e-26 124.4 138 53.6
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 3.1e-26 122.9 138 52.9
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 4.0e-26 122.5 138 52.9
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 5.3e-26 122.1 138 53.6
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 5.3e-26 122.1 138 52.2
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 6.9e-26 121.7 130 56.2
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 9.0e-26 121.3 138 54.3
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 1.2e-25 120.9 138 52.2
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 1.5e-25 120.6 138 53.6
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 2.0e-25 120.2 138 53.6
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 2.0e-25 120.2 138 52.9
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 2.0e-25 120.2 138 52.9
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 2.0e-25 120.2 138 52.9
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 2.0e-25 120.2 138 50.7
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 2.6e-25 119.8 164 48.8
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 3.4e-25 119.4 138 50.7
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 5.8e-25 118.6 138 52.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 5.8e-25 118.6 138 51.4
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 7.6e-25 118.2 138 53.6
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 7.6e-25 118.2 164 46.3
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.3e-24 117.5 156 46.2
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 1.3e-24 117.5 156 46.2
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.7e-24 117.1 138 50.7
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 2.2e-24 116.7 138 52.2
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 2.9e-24 116.3 139 51.1
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 2.9e-24 116.3 138 51.4
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 2.9e-24 116.3 139 51.1
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 3.8e-24 115.9 164 45.7
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 3.8e-24 115.9 138 50.0
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 8.4e-24 114.8 139 50.4
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 8.4e-24 114.8 138 50.7
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 8.4e-24 114.8 139 50.4
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 1.1e-23 114.4 138 50.0
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 1.1e-23 114.4 139 50.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.4e-23 114.0 138 51.4
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 3.5e-22 109.4 138 48.6
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 7.9e-22 108.2 139 49.6
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 1.0e-21 107.8 138 47.8
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 1.0e-21 107.8 138 48.6
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 1.0e-21 107.8 138 48.6
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 1.3e-21 107.5 126 49.2
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 1.3e-21 107.5 138 47.8
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 1.8e-21 107.1 164 43.3
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 3.9e-21 105.9 138 50.0
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 3.9e-21 105.9 139 50.4
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 3.9e-21 105.9 139 50.4
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 3.9e-21 105.9 139 49.6
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 5.1e-21 105.5 124 50.0
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 8.7e-21 104.8 139 48.9
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 8.7e-21 104.8 138 47.1
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.5e-20 104.0 138 50.0
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 1.9e-20 103.6 138 49.3
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 3.3e-20 102.8 138 48.6
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 4.3e-20 102.4 138 47.8
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 5.6e-20 102.1 138 47.8
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 5.6e-20 102.1 139 48.9
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 5.6e-20 102.1 139 48.9
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 2.1e-19 100.1 117 54.7
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 2.8e-19 99.8 138 47.8
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.4e-18 96.7 125 44.0
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.3e-18 95.5 138 43.5
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 6.9e-18 95.1 138 44.9
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 6.9e-18 95.1 147 41.5
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 9.0e-18 94.7 150 42.7
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 2.0e-17 93.6 145 45.5
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 2.6e-17 93.2 107 53.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.5e-17 92.4 138 42.8
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 5.8e-17 92.0 107 54.2
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 1.0e-16 91.3 118 50.0
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.7e-16 90.5 127 48.8
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.9e-16 89.7 88 55.7
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 2.7e-14 83.2 150 37.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 1.8e-13 80.5 150 38.0
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 6.7e-13 78.6 150 36.7
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 3.1e-10 69.7 137 35.0
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 7.6e-09 65.1 63 58.7
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 1.7e-08 63.9 89 46.1
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.0e-08 62.4 51 58.8
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 5.0e-08 62.4 138 31.9
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.2e-07 58.5 63 52.4
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 1.2e-06 57.8 158 30.4
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.1e-06 57.0 102 32.4
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 2.7e-06 56.6 157 28.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.6e-06 56.2 30 83.3


User provided reference genes

Program Settings