Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.9e-303 1042.7 500 100.0
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.9e-301 1036.9 500 99.4
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.1e-300 1035.8 500 99.4
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.5e-299 1030.8 500 99.0
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.5e-299 1030.8 500 98.8
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-299 1030.4 500 98.8
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.7e-298 1028.5 500 98.6
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.6e-298 1026.5 500 97.8
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 9.5e-297 1022.7 500 98.0
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 8.9e-295 1016.1 500 97.2
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.8e-294 1013.4 500 97.0
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.6e-294 1013.1 500 97.0
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.4e-292 1008.1 500 96.8
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 1.2e-211 740.0 500 70.4
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 3.4e-209 731.9 509 69.4
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 2.7e-206 722.2 499 69.5
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 5.0e-205 718.0 502 68.3
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 1.0e-202 710.3 498 68.7
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 1.7e-200 703.0 499 68.3
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 5.4e-199 698.0 474 70.0
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 1.6e-198 696.4 496 67.3
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 1.0e-197 693.7 504 68.3
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 1.3e-197 693.3 479 68.9
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 3.6e-195 685.3 470 68.7
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 1.8e-194 682.9 498 65.3
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 1.8e-194 682.9 499 66.3
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 3.1e-194 682.2 501 66.1
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 1.3e-192 676.8 497 66.2
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 6.0e-190 667.9 497 65.4
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 9.5e-188 660.6 402 76.6
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 8.1e-187 657.5 503 64.4
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 1.4e-186 656.8 509 63.9
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 3.1e-186 655.6 496 63.9
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 8.3e-184 647.5 502 64.1
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 1.1e-183 647.1 404 74.8
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 1.9e-183 646.4 360 81.4
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 9.2e-183 644.0 400 75.0
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.6e-182 643.3 500 61.4
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 1.6e-182 643.3 400 74.5
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 2.1e-182 642.9 400 74.0
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 2.1e-182 642.9 502 62.7
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 2.1e-182 642.9 485 65.2
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.0e-181 640.6 404 76.2
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 1.3e-181 640.2 494 62.6
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 1.7e-181 639.8 489 64.2
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 3.0e-181 639.0 499 63.3
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 5.1e-181 638.3 499 62.5
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 8.6e-181 637.5 487 62.6
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 1.1e-180 637.1 415 71.3
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 1.5e-180 636.7 500 62.6
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 3.3e-180 635.6 500 63.4
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 9.5e-180 634.0 487 63.4
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.2e-179 633.6 398 74.6
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 2.4e-178 629.4 409 71.9
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 4.0e-178 628.6 501 62.3
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 9.9e-177 624.0 405 70.4
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.7e-176 623.2 506 61.1
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 2.9e-176 622.5 479 63.9
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 2.9e-176 622.5 500 60.2
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 6.4e-176 621.3 501 60.9
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 8.4e-176 620.9 498 61.4
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 7.1e-175 617.8 378 73.8
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 1.6e-174 616.7 400 72.2
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 3.5e-174 615.5 486 61.9
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 4.6e-174 615.1 487 62.2
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 6.0e-174 614.8 492 62.0
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 2.3e-173 612.8 400 70.2
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 3.0e-173 612.5 495 59.0
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 1.1e-172 610.5 350 82.9
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 3.3e-172 609.0 487 61.6
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 7.3e-172 607.8 400 71.0
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 2.1e-171 606.3 400 70.5
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 4.7e-171 605.1 402 70.1
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 8.1e-171 604.4 401 70.8
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 3.1e-170 602.4 396 70.7
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 9.0e-170 600.9 396 71.5
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.2e-169 600.5 393 72.0
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 4.4e-169 598.6 506 59.5
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 2.1e-166 589.7 403 68.0
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 1.7e-165 586.6 370 73.0
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 8.1e-163 577.8 499 56.9
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 2.1e-158 563.1 372 70.2
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 7.9e-158 561.2 443 60.7
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 7.9e-158 561.2 359 72.1
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 1.9e-156 556.6 430 62.6
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 9.6e-156 554.3 478 57.9
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 3.7e-155 552.4 391 66.0
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 1.1e-151 540.8 508 54.7
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 4.6e-150 535.4 350 70.0
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 2.3e-149 533.1 458 57.0
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 6.7e-149 531.6 489 56.6
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 5.3e-130 468.8 391 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 2.6e-129 466.5 386 58.8
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 1.5e-124 450.7 293 73.0
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 3.6e-118 429.5 477 50.3
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 8.0e-118 428.3 353 59.8
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 8.8e-109 398.3 407 49.4
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 3.3e-95 353.2 296 56.8
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.1e-90 338.2 209 74.6
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 4.7e-86 322.8 433 40.4
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 4.1e-82 309.7 443 39.3
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 3.0e-72 276.9 447 37.1
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 3.9e-64 250.0 302 44.7
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 5.6e-63 246.1 399 38.1
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 1.8e-61 241.1 162 69.8
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 1.4e-42 178.3 222 45.0
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 7.9e-41 172.6 322 31.1
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.2e-28 132.1 100 66.0
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 1.2e-28 132.1 308 32.1
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 1.9e-23 114.8 295 29.2
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 4.2e-18 97.1 73 64.4
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 6.7e-16 89.7 59 64.4
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 5.5e-10 70.1 89 40.4


User provided reference genes

Program Settings