Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 0.0e+00 1101.3 549 100.0
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.6e-305 1050.8 549 96.2
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.9e-238 828.6 494 81.6
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 3.7e-233 811.6 541 75.0
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.1e-208 728.8 472 74.6
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.1e-200 703.7 522 67.2
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.8e-200 703.0 516 66.9
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 7.7e-199 697.6 516 66.3
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 7.7e-199 697.6 510 67.1
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 6.5e-198 694.5 512 67.0
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 7.2e-197 691.0 516 65.7
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 8.0e-196 687.6 493 66.9
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.8e-195 686.4 516 65.1
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 2.0e-194 682.9 552 63.0
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 2.6e-194 682.6 485 69.5
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 3.4e-194 682.2 491 68.4
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 1.3e-193 680.2 484 69.6
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 8.3e-193 677.6 457 70.5
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 1.8e-192 676.4 517 63.6
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 3.5e-191 672.2 473 67.4
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 4.5e-191 671.8 477 67.9
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.7e-190 669.8 467 69.8
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.9e-190 669.1 490 64.7
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 2.9e-190 669.1 476 68.5
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 5.0e-190 668.3 539 61.8
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 8.0e-188 661.0 454 69.6
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.8e-187 659.8 549 60.1
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 3.0e-187 659.1 511 63.4
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 6.8e-187 657.9 487 66.1
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 5.7e-186 654.8 507 62.7
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 6.3e-185 651.4 539 60.7
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 2.7e-183 646.0 471 65.0
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.0e-182 644.0 473 66.4
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.9e-181 639.8 455 67.5
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.9e-181 639.8 467 67.5
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 2.5e-181 639.4 449 65.9
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 3.3e-181 639.0 549 59.4
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 9.5e-181 637.5 467 64.7
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.2e-180 637.1 454 70.0
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 8.0e-180 634.4 522 59.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 2.3e-179 632.9 522 59.2
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 4.0e-179 632.1 481 62.8
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.5e-178 630.2 523 59.7
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 4.4e-178 628.6 475 63.4
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 9.8e-178 627.5 457 67.6
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 6.4e-177 624.8 550 57.3
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 8.3e-177 624.4 488 63.7
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.1e-176 624.0 481 61.7
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 1.4e-176 623.6 477 64.2
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 1.9e-176 623.2 491 63.1
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 4.1e-176 622.1 498 60.6
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 7.0e-176 621.3 504 60.7
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.2e-175 620.5 478 62.8
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 2.7e-175 619.4 481 60.7
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 3.5e-175 619.0 500 61.0
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 6.6e-174 614.8 488 61.7
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.8e-171 606.7 496 64.1
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 1.5e-170 603.6 537 57.9
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 7.5e-170 601.3 534 56.9
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.7e-169 600.1 463 63.3
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 4.9e-169 598.6 463 63.1
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 3.2e-168 595.9 468 62.4
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.3e-166 590.5 457 61.7
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.7e-166 590.1 340 83.2
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 5.1e-166 588.6 384 72.9
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.1e-165 587.4 455 61.5
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.5e-165 587.0 477 60.8
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.9e-161 572.8 455 60.9
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 6.4e-161 571.6 523 56.2
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.4e-160 570.5 461 60.5
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.7e-158 563.5 458 59.4
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 2.3e-158 563.1 470 58.9
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.9e-157 560.1 481 57.8
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.6e-156 555.8 461 59.4
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 3.6e-156 555.8 497 57.7
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 4.0e-155 552.4 451 59.9
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 8.9e-155 551.2 451 59.6
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 2.0e-154 550.1 488 55.3
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.7e-153 547.0 469 58.0
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 1.4e-152 543.9 526 54.0
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 5.4e-152 542.0 451 59.6
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.7e-151 539.7 526 51.5
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 4.6e-151 538.9 461 57.5
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 7.8e-151 538.1 451 59.2
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 7.3e-149 531.6 502 54.2
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.3e-148 530.8 457 54.9
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.1e-147 527.7 508 55.1
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 3.8e-145 519.2 465 57.8
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.4e-144 517.3 352 69.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 6.9e-139 498.4 364 65.9
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.1e-136 491.1 552 50.2
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 1.5e-133 480.7 469 54.2
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 1.5e-133 480.7 469 54.2
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 3.7e-132 476.1 349 65.3
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.4e-131 473.4 257 93.0
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.5e-130 470.7 456 51.1
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 1.9e-125 453.8 361 62.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 6.2e-124 448.7 468 47.9
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 4.0e-123 446.0 538 45.4
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.4e-120 437.6 374 58.8
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 3.2e-120 436.4 462 50.0
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 6.9e-115 418.7 333 61.6
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 5.0e-113 412.5 359 57.7
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 6.5e-113 412.1 363 58.4
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 3.2e-112 409.8 470 44.9
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 4.2e-112 409.5 466 45.9
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 7.2e-112 408.7 467 48.2
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 3.6e-103 379.8 409 46.7
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.8e-102 377.5 367 53.1
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 9.4e-80 302.0 313 49.2
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 3.3e-72 276.9 219 63.0
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 9.5e-72 275.4 492 38.2
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 7.5e-69 265.8 252 51.6
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.4e-67 260.8 208 60.1
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.7e-65 254.6 167 69.5
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 3.9e-65 253.4 196 64.3
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 5.6e-64 249.6 179 67.0
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 5.0e-57 226.5 190 59.5
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 7.8e-50 202.6 147 65.3
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 6.4e-44 183.0 154 57.8
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.4e-43 181.8 117 71.8
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 3.2e-27 127.5 146 47.3
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.5e-21 108.6 62 75.8
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 9.3e-19 99.4 103 48.5
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 2.8e-15 87.8 79 55.7
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 6.0e-10 70.1 84 44.0
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 5.1e-09 67.0 158 36.7
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 1.6e-07 62.0 42 57.1


User provided reference genes

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