Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.6e-164 582.8 307 100.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.4e-125 452.6 296 80.4
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 3.6e-121 438.7 270 83.0
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 3.4e-119 432.2 269 80.7
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 7.1e-117 424.5 258 83.7
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.3e-114 414.5 271 76.0
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 2.2e-110 402.9 268 76.9
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 7.3e-106 387.9 273 73.3
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.6e-105 385.6 274 71.2
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 2.0e-103 379.8 269 71.7
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 2.0e-103 379.8 273 72.9
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.7e-102 376.7 271 70.1
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 6.4e-102 374.8 270 70.0
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 8.4e-102 374.4 276 71.7
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 8.4e-102 374.4 270 69.6
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.2e-101 372.5 269 72.1
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 9.3e-101 370.9 269 69.5
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 9.3e-101 370.9 270 72.6
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 2.1e-100 369.8 274 70.4
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.7e-100 369.4 270 68.9
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.7e-99 366.7 271 68.3
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 3.0e-99 365.9 275 70.5
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.9e-98 363.2 282 68.4
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 3.3e-98 362.5 269 68.8
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 7.3e-98 361.3 268 69.8
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 8.1e-97 357.8 275 66.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.1e-96 357.5 269 67.7
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 2.4e-96 356.3 234 76.5
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.0e-95 353.2 269 66.2
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.3e-94 350.5 268 67.5
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 1.3e-94 350.5 260 70.4
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.9e-94 349.4 273 65.2
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 3.2e-93 345.9 279 66.7
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 7.1e-93 344.7 272 66.5
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 2.7e-92 342.8 271 66.1
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.3e-91 340.5 237 71.7
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 2.3e-91 339.7 272 65.4
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 3.9e-91 339.0 269 64.7
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 5.1e-91 338.6 273 63.0
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 6.6e-91 338.2 290 65.5
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 8.7e-91 337.8 261 68.6
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-90 337.4 269 64.3
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.9e-90 336.7 270 64.8
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 2.5e-90 336.3 227 71.4
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.3e-90 335.9 270 65.6
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.6e-90 335.1 275 63.3
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 6.2e-89 331.6 275 64.4
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.1e-88 329.3 279 61.3
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 3.1e-88 329.3 268 63.4
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.0e-88 328.9 279 61.3
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 5.3e-88 328.6 270 63.0
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 9.9e-87 324.3 269 63.2
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 3.8e-86 322.4 273 62.6
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 4.9e-86 322.0 231 67.5
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 4.9e-86 322.0 238 66.8
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.9e-85 320.1 281 58.0
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 7.1e-85 318.2 237 67.5
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.2e-84 317.4 276 58.7
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 7.9e-84 314.7 282 60.6
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.9e-84 314.7 240 67.1
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 5.1e-83 312.0 251 61.4
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 8.7e-83 311.2 224 70.1
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 4.3e-82 308.9 240 63.3
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.3e-82 308.9 273 61.2
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 5.6e-82 308.5 237 62.4
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 7.4e-82 308.1 266 60.9
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.8e-81 305.4 273 59.0
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 6.2e-81 305.1 240 62.9
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.1e-81 304.7 273 58.6
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.1e-80 304.3 240 62.9
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.8e-80 303.5 241 62.7
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 3.1e-80 302.8 240 62.9
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 5.3e-80 302.0 240 64.2
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 6.9e-80 301.6 272 55.5
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.2e-79 300.8 240 62.1
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.2e-79 300.8 240 62.1
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.5e-79 300.4 240 62.1
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.6e-79 299.7 240 62.9
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.6e-79 299.7 240 62.9
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 7.6e-79 298.1 205 73.2
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-78 297.0 206 71.8
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 2.2e-78 296.6 239 62.3
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.8e-78 295.8 222 68.0
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 5.5e-77 292.0 236 62.3
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 3.9e-75 285.8 269 58.0
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 3.3e-74 282.7 197 71.6
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 2.8e-73 279.6 191 75.9
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 4.1e-72 275.8 246 58.9
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 6.9e-72 275.0 197 70.6
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 5.9e-71 271.9 286 51.4
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 5.0e-70 268.9 219 62.6
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.1e-69 267.7 264 56.1
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.5e-69 266.5 236 58.5
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 9.3e-69 264.6 260 53.1
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.7e-67 258.1 187 69.5
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.5e-66 257.3 244 56.6
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-64 251.1 181 70.2
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 4.1e-64 249.2 229 54.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.7e-62 243.8 262 53.4
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.8e-62 242.7 245 54.7
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-57 227.6 231 55.0
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.1e-53 214.5 160 68.8
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.1e-52 210.3 123 80.5
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-51 206.1 235 53.2
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 3.2e-45 186.4 121 71.9
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 2.1e-44 183.7 186 54.3
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.1e-40 169.9 172 52.9
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 3.5e-39 166.4 154 58.4
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.7e-36 156.0 138 59.4
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 6.1e-36 155.6 216 39.4
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.0e-35 153.3 125 64.8
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-34 149.4 253 41.1
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.8e-33 146.0 116 65.5
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-27 127.1 103 61.2
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.5e-23 112.8 86 62.8
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.0e-22 111.7 112 53.6
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-22 110.5 124 49.2
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.6e-21 105.9 127 50.4
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.6e-20 103.2 71 73.2
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.1e-20 102.4 74 66.2
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 6.8e-19 99.0 217 37.8
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.7e-17 94.4 98 52.0
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.8e-16 90.9 129 45.0
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.1e-16 89.7 88 52.3
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.0e-15 87.4 82 50.0
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-15 87.0 99 49.5
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.3e-14 84.7 95 47.4
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.6e-14 82.4 75 56.0
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-13 80.5 84 48.8
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 5.8e-10 69.3 66 50.0
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.0e-08 62.4 143 30.1
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-07 60.1 48 60.4
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 6.0e-07 59.3 56 57.1
SalBow1G4086 Salvia bowleyana HOM05D005360 ORTHO05D006501 6.0e-07 59.3 103 36.9
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.0e-06 58.5 39 74.4
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 1.3e-06 58.2 93 36.6
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 1.7e-06 57.8 46 52.2
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 3.9e-06 56.6 53 45.3
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 3.9e-06 56.6 53 45.3


User provided reference genes

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