Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014571 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 2.4e-41 171.8 91 100.0
CSS0017005 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 2.5e-30 135.2 97 78.4
Cc02_g26960 Coffea canephora HOM05D007302 ORTHO05D009191 1.3e-26 122.9 107 66.4
Manes.10G151800 Manihot esculenta HOM05D007302 ORTHO05D009191 1.7e-26 122.5 111 64.0
TWI09G1618 Tripterygium wilfordii HOM05D007302 ORTHO05D009191 4.9e-26 120.9 111 64.0
CSS0001542 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.1e-25 119.8 112 65.2
Actinidia05847 Actinidia chinensis HOM05D007302 ORTHO05D009191 1.9e-25 119.0 113 64.6
vmacro13612 Vaccinium macrocarpon HOM05D007302 ORTHO05D009191 5.5e-25 117.5 111 63.1
CSS0004707 Camellia sinensis var. sinensis HOM05D007302 ORTHO05D009191 1.2e-24 116.3 112 64.3
Haze_03286 Corylus avellana HOM05D007302 ORTHO05D009191 1.2e-24 116.3 111 62.2
FAN06G3306 Fragaria x ananassa HOM05D007302 ORTHO05D009191 1.6e-24 115.9 109 62.4
FAN10G3108 Fragaria x ananassa HOM05D007302 ORTHO05D009191 1.6e-24 115.9 109 62.4
QL04p001433 Quercus lobata HOM05D007302 ORTHO05D009191 1.6e-24 115.9 110 61.8
Prupe.2G003100 Prunus persica HOM05D007302 ORTHO05D009191 2.1e-24 115.5 111 61.3
Actinidia25680 Actinidia chinensis HOM05D007302 ORTHO05D009191 4.6e-24 114.4 114 60.5
Ciclev10033063m.g Citrus clementina HOM05D007302 ORTHO05D009191 4.6e-24 114.4 108 61.1
QL04p001298 Quercus lobata HOM05D007302 ORTHO05D009191 4.6e-24 114.4 110 60.9
Cfa010688 Carpinus fangiana HOM05D007302 ORTHO05D009191 6.0e-24 114.0 111 61.3
TAR369G0332 Trochodendron aralioides HOM05D007302 ORTHO05D009191 6.0e-24 114.0 111 60.4
TAR369G0850 Trochodendron aralioides HOM05D007302 ORTHO05D009191 6.0e-24 114.0 111 60.4
Actinidia31711 Actinidia chinensis HOM05D007302 ORTHO05D009191 1.3e-23 112.8 113 60.2
MELO3C023508.2 Cucumis melo HOM05D007302 ORTHO05D009191 1.8e-23 112.5 109 58.7
CsaV3_7G031460 Cucumis sativus L. HOM05D007302 ORTHO05D009191 1.8e-23 112.5 104 60.6
MD07G1001600 Malus domestica HOM05D007302 ORTHO05D009191 1.8e-23 112.5 111 58.6
Ca_02882_v3 Cicer arietinum L. HOM05D007302 ORTHO05D009191 3.9e-23 111.3 112 58.0
GSVIVG01001360001 Vitis vinifera HOM05D007302 ORTHO05D009191 5.1e-23 110.9 100 65.0
DCAR_015712 Daucus carota HOM05D007302 ORTHO05D009191 6.7e-23 110.5 114 59.6
Glyma.15G268700 Glycine max HOM05D007302 ORTHO05D009191 1.1e-22 109.8 111 59.5
MSTRG.28098 Avicennia marina HOM05D007302 ORTHO05D009191 1.5e-22 109.4 107 57.9
Cpa.g.sc189.6 Carica papaya HOM05D007302 ORTHO05D009191 1.5e-22 109.4 111 56.8
FAN03G0504 Fragaria x ananassa HOM05D007302 ORTHO05D009191 1.5e-22 109.4 108 59.3
HanXRQChr15g0480631 Helianthus annuus HOM05D007302 ORTHO05D009191 1.5e-22 109.4 98 62.2
Sed0011752 Sechium edule HOM05D007302 ORTHO05D009191 1.9e-22 109.0 104 57.7
Potri.001G230100 Populus trichocarpa HOM05D007302 ORTHO05D009191 2.5e-22 108.6 108 56.5
CANSAT11G0176 Cannabis sativa HOM05D007302 ORTHO05D009191 3.3e-22 108.2 104 60.6
Sp4g26420 Schrenkiella parvula HOM05D007302 ORTHO05D009191 3.3e-22 108.2 100 62.0
MBI08_g23101_MAGBIO Magnolia biondii HOM05D007302 ORTHO05D009191 5.7e-22 107.5 109 58.7
Medtr2g061420 Medicago truncatula HOM05D007302 ORTHO05D009191 5.7e-22 107.5 112 57.1
Psat1g127480 Pisum sativum HOM05D007302 ORTHO05D009191 7.4e-22 107.1 112 56.2
Rhsim07G0050000 Rhododendron simsii HOM05D007302 ORTHO05D009191 9.7e-22 106.7 110 58.2
PGSC0003DMG400028766 Solanum tuberosum HOM05D007302 ORTHO05D009191 9.7e-22 106.7 111 58.6
Thhalv10001676m.g Eutrema salsugineum HOM05D007302 ORTHO05D009191 1.3e-21 106.3 103 60.2
Thecc.01G416400 Theobroma cacao HOM05D007302 ORTHO05D009191 1.3e-21 106.3 100 62.0
VMungo1080G0568 Vigna mungo HOM05D007302 ORTHO05D009191 1.3e-21 106.3 111 56.8
Aa31LG1G25940 Aethionema arabicum HOM05D007302 ORTHO05D009191 1.6e-21 105.9 99 61.6
Migut.N01659 Erythranthe guttata HOM05D007302 ORTHO05D009191 1.6e-21 105.9 107 55.1
Migut.O00474 Erythranthe guttata HOM05D007302 ORTHO05D009191 1.6e-21 105.9 107 55.1
Phvul.005G041100 Phaseolus vulgaris HOM05D007302 ORTHO05D009191 2.2e-21 105.5 101 60.4
TPR.G16161 Trifolium pratense HOM05D007302 ORTHO05D009191 2.2e-21 105.5 113 57.5
Nn2g15684 Nelumbo nucifera HOM05D007302 ORTHO05D009191 2.8e-21 105.1 99 61.6
SalBow4G1665 Salvia bowleyana HOM05D007302 ORTHO05D009191 2.8e-21 105.1 109 56.9
SalBow4G2255 Salvia bowleyana HOM05D007302 ORTHO05D009191 2.8e-21 105.1 109 56.9
Atru.chr11.2701 Acer truncatum HOM05D007302 ORTHO05D009191 3.7e-21 104.8 111 60.4
ClCG09G003750 Citrullus lanatus HOM05D007302 ORTHO05D009191 4.8e-21 104.4 112 56.2
PSO384G4593 Papaver somniferum HOM05D007302 ORTHO05D009191 8.2e-21 103.6 111 57.7
Sopen10g014540 Solanum pennellii HOM05D007302 ORTHO05D009191 1.1e-20 103.2 100 59.0
Lj3g0023486 Lotus japonicus HOM05D007302 ORTHO05D009191 1.4e-20 102.8 111 55.0
Lj6g0025867 Lotus japonicus HOM05D007302 ORTHO05D009191 1.4e-20 102.8 111 55.0
Aqoxy1G00038 Aquilegia oxysepala HOM05D003342 ORTHO05D003861 1.8e-20 102.4 99 60.6
AT2G44360 Arabidopsis thaliana HOM05D007302 ORTHO05D009191 1.8e-20 102.4 109 56.0
Eucgr.G03411 Eucalyptus grandis HOM05D007302 ORTHO05D009191 1.8e-20 102.4 100 58.0
Solyc10g045350.2 Solanum lycopersicum HOM05D007302 ORTHO05D009191 1.8e-20 102.4 100 59.0
Gohir.D08G037201 Gossypium hirsutum HOM05D007302 ORTHO05D009191 2.4e-20 102.1 110 55.5
Gorai.004G035200 Gossypium raimondii HOM05D007302 ORTHO05D009191 2.4e-20 102.1 110 55.5
Lsat_1_v5_gn_1_87261 Lactuca sativa HOM05D007302 ORTHO05D009191 3.1e-20 101.7 107 59.8
PSO339G0269 Papaver somniferum HOM05D007302 ORTHO05D009191 3.1e-20 101.7 111 55.9
RcHm_v2.0_Chr1g0313291 Rosa chinensis HOM05D007302 ORTHO05D009191 3.1e-20 101.7 108 58.3
Carub.0004s2694 Capsella rubella HOM05D007302 ORTHO05D009191 4.1e-20 101.3 105 57.1
CARHR139520 Cardamine hirsuta HOM05D007302 ORTHO05D009191 5.3e-20 100.9 100 58.0
Duzib268G0295 Durio zibethinus HOM05D007302 ORTHO05D009191 5.3e-20 100.9 111 55.9
arahy.Tifrunner.gnm1.ann1.5U19IL Arachis hypogaea HOM05D007302 ORTHO05D009191 6.9e-20 100.5 111 55.0
arahy.Tifrunner.gnm1.ann1.Z7X15P Arachis hypogaea HOM05D007302 ORTHO05D009191 6.9e-20 100.5 109 52.3
Sabra16G0137900 Salix brachista HOM05D007302 ORTHO05D009191 6.9e-20 100.5 99 56.6
Lalb_Chr25g0283591 Lupinus albus HOM05D007302 ORTHO05D009191 1.5e-19 99.4 110 57.3
SGA_v2.0_scaffold95G28773 Striga asiatica HOM05D007302 ORTHO05D009191 1.5e-19 99.4 96 58.3
BcaB06g29370 Brassica carinata HOM05D007302 ORTHO05D009191 2.0e-19 99.0 112 57.1
C04p70980 Brassica napus HOM05D007302 ORTHO05D009191 2.0e-19 99.0 112 57.1
BolC4t28601H Brassica oleracea HOM05D007302 ORTHO05D009191 2.0e-19 99.0 112 57.1
THA.LOC104817151 Tarenaya hassleriana HOM05D007302 ORTHO05D009191 2.0e-19 99.0 101 55.4
ECA248G3756 Erigeron canadensis HOM05D007302 ORTHO05D009191 2.6e-19 98.6 100 59.0
A04p33280 Brassica napus HOM05D007302 ORTHO05D009191 3.4e-19 98.2 114 57.0
BraA04t18789Z Brassica rapa HOM05D007302 ORTHO05D009191 3.4e-19 98.2 114 57.0
AL4G43340 Arabidopsis lyrata HOM05D007302 ORTHO05D009191 4.5e-19 97.8 109 54.1
Sc11g0006270 Simmondsia chinensis HOM05D007302 ORTHO05D009191 4.5e-19 97.8 91 60.4
Peaxi162Scf00245g01315 Petunia axillaris HOM05D007302 ORTHO05D009191 7.6e-19 97.1 110 55.5
Gohir.A08G026680 Gossypium hirsutum HOM05D007302 ORTHO05D009191 1.0e-18 96.7 102 54.9
Nn7g36009 Nelumbo nucifera HOM05D007302 ORTHO05D009191 1.3e-18 96.3 101 56.4
unitig_736.g22290 Utricularia gibba HOM05D007302 ORTHO05D009191 1.7e-18 95.9 115 50.4
FvH4_7g00100 Fragaria vesca HOM05D007302 ORTHO05D009191 8.5e-18 93.6 89 61.8
CiPaw.16G067000 Carya illinoinensis HOM05D007302 ORTHO05D009191 4.2e-17 91.3 103 52.4
ATR0807G228 Amborella trichopoda HOM05D007302 ORTHO05D009191 2.7e-16 88.6 101 50.5
EL10Ac9g21938 Beta vulgaris HOM05D007302 ORTHO05D009191 4.6e-16 87.8 110 50.9
Hund06578 Selenicereus undatus HOM05D007302 ORTHO05D009191 4.6e-16 87.8 111 51.4
AUR62011558 Chenopodium quinoa HOM05D007302 ORTHO05D009191 1.4e-15 86.3 96 54.2
CDE07G1496 Ceratophyllum demersum HOM05D007302 ORTHO05D009191 2.3e-15 85.5 100 49.0
AUR62016377 Chenopodium quinoa HOM05D007302 ORTHO05D009191 8.8e-15 83.6 106 50.9
Dinv43937 Davidia involucrata HOM05D007302 ORTHO05D009191 8.2e-13 77.0 111 47.7
SEGI_27997 Sequoiadendron giganteum HOM05D007302 ORTHO05D009191 4.1e-12 74.7 97 46.4
HPP92_022445 Vanilla planifolia HOM05D007302 ORTHO05D009191 4.5e-11 71.2 49 75.5
COL.COLO4_25061 Corchorus olitorius HOM05D007302 ORTHO05D009191 6.5e-10 67.4 83 50.6
Oeu003126.2 Olea europaea HOM05D007302 ORTHO05D009191 2.7e-08 62.0 70 51.4
DCAR_024994 Daucus carota HOM05D007302 ORTHO05D009191 3.3e-06 55.1 89 44.9


User provided reference genes

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