Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 9.0e-68 260.4 157 100.0
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 4.0e-31 138.7 86 74.4
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 3.3e-30 135.6 86 77.9
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 7.5e-30 134.4 99 71.7
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 9.7e-30 134.0 101 63.4
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 3.7e-29 132.1 86 75.6
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 8.2e-29 131.0 104 63.5
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 8.2e-29 131.0 86 68.6
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.4e-28 129.4 89 62.9
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 4.1e-28 128.6 89 64.0
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 5.3e-28 128.3 100 76.0
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 5.3e-28 128.3 108 57.4
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 7.0e-28 127.9 89 76.4
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 9.1e-28 127.5 82 79.3
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 1.2e-27 127.1 89 69.7
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.2e-27 127.1 88 62.5
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 1.6e-27 126.7 86 73.3
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.0e-27 126.3 98 61.2
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.0e-27 126.3 98 61.2
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.0e-27 126.3 82 78.0
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 3.5e-27 125.6 89 67.4
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 5.9e-27 124.8 83 69.9
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.0e-26 124.0 89 60.7
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.3e-26 123.6 100 55.0
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 1.7e-26 123.2 103 54.4
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 2.2e-26 122.9 108 61.1
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 6.5e-26 121.3 104 56.7
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 8.5e-26 120.9 93 65.6
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.5e-26 120.9 89 60.7
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.5e-26 120.9 89 60.7
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.5e-25 120.2 86 66.3
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.9e-25 119.8 86 59.3
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.9e-25 119.8 89 64.0
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 1.9e-25 119.8 89 57.3
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 2.5e-25 119.4 89 59.6
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 5.5e-25 118.2 73 80.8
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.4e-25 117.5 86 58.1
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 9.4e-25 117.5 86 58.1
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 1.2e-24 117.1 89 65.2
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.2e-24 117.1 97 54.6
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.2e-24 117.1 90 65.6
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 1.6e-24 116.7 89 57.3
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 2.7e-24 115.9 86 69.8
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 3.6e-24 115.5 67 80.6
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 3.6e-24 115.5 91 65.9
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 4.7e-24 115.2 86 66.3
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 6.1e-24 114.8 88 61.4
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 8.0e-24 114.4 89 58.4
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 8.0e-24 114.4 90 66.7
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 8.0e-24 114.4 79 68.4
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.4e-23 113.6 82 61.0
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.3e-23 112.8 89 57.3
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 3.0e-23 112.5 87 58.6
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 3.0e-23 112.5 108 61.1
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 8.8e-23 110.9 100 51.0
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 8.8e-23 110.9 71 70.4
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 8.8e-23 110.9 89 67.4
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.2e-22 110.5 89 57.3
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.5e-22 110.2 89 64.0
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 2.6e-22 109.4 79 60.8
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 3.4e-22 109.0 100 67.0
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 3.4e-22 109.0 89 67.4
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 5.7e-22 108.2 86 66.3
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 7.5e-22 107.8 93 52.7
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 9.8e-22 107.5 87 60.9
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 1.3e-21 107.1 88 68.2
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 1.3e-21 107.1 87 69.0
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 1.7e-21 106.7 88 54.5
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.7e-21 106.7 92 65.2
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 2.2e-21 106.3 85 57.6
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 2.2e-21 106.3 71 64.8
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 2.2e-21 106.3 87 57.5
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 3.7e-21 105.5 104 57.7
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 1.4e-20 103.6 89 59.6
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 1.8e-20 103.2 96 49.0
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 2.4e-20 102.8 82 67.1
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 3.1e-20 102.4 71 67.6
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 3.1e-20 102.4 116 55.2
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 4.1e-20 102.1 86 66.3
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 4.1e-20 102.1 89 61.8
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 7.0e-20 101.3 105 47.6
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 9.1e-20 100.9 80 76.2
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.2e-19 100.5 82 56.1
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.2e-19 100.5 86 67.4
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 1.6e-19 100.1 88 67.0
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 2.0e-19 99.8 101 59.4
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.7e-19 99.4 88 54.5
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 2.7e-19 99.4 88 54.5
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.7e-19 99.4 88 54.5
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.7e-19 99.4 92 59.8
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 4.5e-19 98.6 89 61.8
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 5.9e-19 98.2 88 53.4
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 5.9e-19 98.2 59 71.2
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 5.9e-19 98.2 88 60.2
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 7.7e-19 97.8 89 57.3
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 1.0e-18 97.4 82 56.1
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 1.0e-18 97.4 81 66.7
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 1.7e-18 96.7 87 60.9
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 2.3e-18 96.3 89 58.4
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 2.3e-18 96.3 97 54.6
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 2.9e-18 95.9 103 57.3
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 2.9e-18 95.9 88 58.0
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 3.8e-18 95.5 82 54.9
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 6.5e-18 94.7 102 54.9
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 6.5e-18 94.7 67 61.2
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 1.1e-17 94.0 90 62.2
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 1.1e-17 94.0 89 58.4
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.1e-17 94.0 86 64.0
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 1.5e-17 93.6 86 60.5
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.9e-17 93.2 86 50.0
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 1.9e-17 93.2 90 51.1
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 2.5e-17 92.8 86 60.5
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.5e-17 92.8 86 60.5
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.5e-17 92.8 86 60.5
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 5.5e-17 91.7 94 48.9
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 2.8e-16 89.4 109 45.0
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 2.8e-16 89.4 100 46.0
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 4.7e-16 88.6 89 48.3
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 6.1e-16 88.2 90 51.1
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 6.1e-16 88.2 90 51.1
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 6.1e-16 88.2 107 44.9
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 1.8e-15 86.7 111 42.3
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 1.8e-15 86.7 86 59.3
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 1.8e-15 86.7 89 48.3
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 3.0e-15 85.9 85 57.6
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 3.0e-15 85.9 89 57.3
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.0e-15 85.5 111 42.3
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 4.0e-15 85.5 91 59.3
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 4.0e-15 85.5 82 48.8
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 5.2e-15 85.1 89 46.1
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 6.8e-15 84.7 69 53.6
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 8.9e-15 84.3 97 43.3
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.2e-14 84.0 62 58.1
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 2.0e-14 83.2 79 49.4
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.6e-14 82.8 61 73.8
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.4e-14 82.4 59 72.9
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 3.4e-14 82.4 111 49.5
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 1.3e-13 80.5 89 53.9
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.3e-13 80.5 89 53.9
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.3e-13 80.5 89 53.9
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 1.7e-13 80.1 86 54.7
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 2.2e-13 79.7 97 51.5
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.2e-13 79.7 82 47.6
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 2.8e-13 79.3 89 43.8
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 2.8e-13 79.3 100 40.0
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 2.8e-13 79.3 89 43.8
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 2.8e-13 79.3 96 47.9
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 2.8e-13 79.3 82 47.6
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 2.8e-13 79.3 82 47.6
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 3.7e-13 79.0 89 50.6
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 3.7e-13 79.0 92 41.3
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 3.7e-13 79.0 92 41.3
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 3.7e-13 79.0 89 41.6
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 6.3e-13 78.2 93 48.4
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 8.3e-13 77.8 93 46.2
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 8.3e-13 77.8 70 50.0
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.4e-12 77.0 89 48.3
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.4e-12 77.0 93 39.8
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 1.4e-12 77.0 89 49.4
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 1.4e-12 77.0 89 49.4
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 1.4e-12 77.0 89 47.2
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 1.4e-12 77.0 111 45.0
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.8e-12 76.6 89 43.8
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 3.1e-12 75.9 102 43.1
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 3.1e-12 75.9 89 49.4
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 4.1e-12 75.5 91 48.4
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 9.2e-12 74.3 89 44.9
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 1.2e-11 73.9 89 41.6
Sabra18G0060200 Salix brachista HOM05D003537 ORTHO05D004180 1.6e-11 73.6 122 36.9
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 5.9e-11 71.6 93 39.8
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 5.9e-11 71.6 93 39.8
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 7.8e-11 71.2 97 41.2
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 1.3e-10 70.5 88 44.3
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 1.7e-10 70.1 100 39.0
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.3e-10 69.7 58 65.5
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 5.0e-10 68.6 87 41.4
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 6.6e-10 68.2 99 44.4
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 2.5e-09 66.2 102 38.2
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 4.3e-09 65.5 54 72.2
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.2e-08 63.9 70 44.3
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 2.1e-08 63.2 80 41.2
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 3.6e-08 62.4 88 47.7
MCO09G833 Micromonas commoda HOM05D001438 ORTHO05D001336 1.8e-07 60.1 68 41.2


User provided reference genes

Program Settings