Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 0.0e+00 1526.5 827 100.0
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.0e-223 780.8 940 53.3
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 4.4e-198 695.7 857 51.2
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.0e-194 684.5 842 53.6
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 2.4e-175 620.2 856 47.0
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 2.1e-168 597.0 803 48.7
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 1.4e-159 567.8 993 40.1
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 2.6e-150 537.0 829 43.9
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.0e-142 510.8 846 44.0
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.0e-142 510.8 846 44.0
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.7e-141 507.7 558 54.1
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.5e-132 477.2 858 42.8
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 8.8e-130 468.8 860 40.6
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.9e-125 453.8 836 40.0
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 8.2e-120 435.6 739 42.8
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.0e-114 418.7 1025 34.0
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 6.3e-112 409.5 825 37.3
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.2e-110 405.2 799 38.4
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 5.9e-110 402.9 828 37.3
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.8e-109 400.2 844 36.8
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 6.5e-109 399.4 853 37.5
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 2.2e-104 384.4 849 36.5
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.7e-104 383.6 847 35.9
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.1e-103 382.1 837 36.6
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 1.6e-102 378.3 847 35.9
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 7.8e-102 375.9 929 35.1
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 2.9e-101 374.0 958 33.7
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 2.5e-100 370.9 858 34.7
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 8.9e-98 362.5 851 34.3
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 1.5e-97 361.7 884 35.6
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 7.5e-97 359.4 844 34.7
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 1.3e-96 358.6 871 35.5
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.2e-96 357.8 657 40.8
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 8.3e-96 355.9 655 40.0
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.3e-96 355.9 849 35.2
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 4.1e-95 353.6 799 36.4
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 9.2e-95 352.4 819 35.4
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 1.2e-94 352.1 837 35.7
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.6e-94 351.7 793 37.5
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 3.5e-94 350.5 859 34.9
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 3.5e-94 350.5 837 35.6
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.7e-93 348.2 658 40.3
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 6.6e-93 346.3 829 34.6
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 3.6e-91 340.5 850 34.6
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.4e-87 328.6 862 32.8
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 5.4e-87 326.6 721 35.9
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 3.5e-86 323.9 713 36.6
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 3.9e-85 320.5 786 33.7
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 8.1e-83 312.8 653 37.7
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 2.3e-82 311.2 703 34.7
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 3.1e-82 310.8 822 32.4
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 1.2e-81 308.9 888 31.5
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 2.0e-81 308.1 652 37.6
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 7.5e-81 306.2 887 32.6
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.7e-80 305.1 900 32.0
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 8.3e-80 302.8 321 59.5
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 1.9e-79 301.6 843 32.3
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 2.4e-79 301.2 843 31.7
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 4.6e-78 297.0 923 30.7
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 6.0e-78 296.6 470 42.8
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 8.6e-77 292.7 860 32.6
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 2.8e-75 287.7 860 34.5
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 3.6e-75 287.3 903 30.5
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 3.6e-75 287.3 945 30.2
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 1.2e-73 282.3 824 30.3
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 4.9e-72 276.9 827 30.4
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 4.6e-70 270.4 679 34.6
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 7.8e-70 269.6 510 38.2
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 5.1e-69 266.9 597 36.7
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.1e-68 265.8 876 30.5
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 3.3e-68 264.2 829 32.3
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 9.6e-68 262.7 634 35.2
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 3.6e-67 260.8 838 30.4
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 8.1e-67 259.6 653 34.3
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.9e-64 251.1 653 33.5
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.1e-63 249.2 860 29.7
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.1e-63 249.2 843 30.5
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 1.9e-63 248.4 649 37.4
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 9.3e-63 246.1 646 34.1
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 2.7e-62 244.6 644 34.2
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 6.0e-62 243.4 845 30.4
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.0e-61 242.7 766 30.3
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 1.7e-61 241.9 673 33.9
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 3.0e-61 241.1 684 35.5
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.1e-61 240.4 661 32.5
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.1e-60 239.2 681 32.2
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 4.3e-60 237.3 898 30.7
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 5.6e-60 236.9 446 39.5
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 3.6e-59 234.2 1031 26.9
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 4.8e-59 233.8 650 32.6
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.1e-58 232.6 730 31.8
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.1e-58 231.1 637 33.1
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 3.8e-56 224.2 574 34.0
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.1e-55 222.6 611 34.0
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 6.0e-54 216.9 608 32.9
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 7.9e-54 216.5 1039 26.8
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.8e-53 215.3 629 31.3
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 8.7e-53 213.0 827 28.7
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 3.1e-50 204.5 836 27.9
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 5.3e-50 203.8 820 27.4
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 6.9e-50 203.4 853 27.2
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 1.2e-49 202.6 1044 25.2
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.5e-49 202.2 831 27.4
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 5.8e-49 200.3 907 28.9
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 7.6e-49 199.9 836 27.3
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 4.9e-48 197.2 1018 28.8
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 6.4e-48 196.8 823 27.5
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 8.4e-48 196.4 831 27.4
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.1e-47 196.1 1040 26.2
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.6e-46 192.2 639 29.9
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 4.6e-46 190.7 862 26.8
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 8.7e-45 186.4 352 39.8
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.6e-43 182.2 540 31.5
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 7.1e-39 166.8 673 30.5
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 2.7e-38 164.9 835 26.9
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 7.9e-38 163.3 182 54.4
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.3e-37 162.5 655 28.1
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 2.3e-37 161.8 684 28.9
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 3.0e-37 161.4 392 36.2
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 4.3e-36 157.5 358 35.5
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.8e-34 152.1 610 29.2
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 2.4e-34 151.8 894 24.9
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 6.9e-34 150.2 867 26.1
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.4e-29 136.0 414 32.1
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.7e-27 129.0 109 61.5
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 1.4e-26 125.9 377 30.8
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 9.4e-23 113.2 135 48.9
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 1.8e-21 109.0 134 46.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 2.2e-19 102.1 145 44.8
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 4.8e-19 100.9 98 57.1
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 2.4e-18 98.6 752 23.1
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 7.0e-18 97.1 307 29.0
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 9.1e-18 96.7 174 39.7
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 3.4e-17 94.7 88 54.5
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 6.5e-16 90.5 120 44.2
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 9.4e-15 86.7 106 44.3
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 1.6e-14 85.9 97 45.4
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 2.1e-14 85.5 210 33.8
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 1.4e-13 82.8 83 48.2
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 1.4e-13 82.8 146 38.4
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.5e-12 79.3 139 37.4
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 9.7e-12 76.6 72 54.2
Rhsim08G0120100 Rhododendron simsii HOM05D000004 ORTHO05D000002 1.6e-09 69.3 82 48.8
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.0e-08 66.6 179 30.7
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 6.1e-06 57.4 86 41.9


User provided reference genes

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