Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014516 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D000005 1.0e-111 406.8 208 100.0
Actinidia37676 Actinidia chinensis HOM05D000008 ORTHO05D000005 1.7e-42 176.8 226 50.4
CiPaw.12G020700 Carya illinoinensis HOM05D000008 ORTHO05D000005 2.3e-34 149.8 246 44.3
Duzib084G1072 Durio zibethinus HOM05D000008 ORTHO05D000005 5.1e-34 148.7 235 44.7
QL10p014458 Quercus lobata HOM05D000008 ORTHO05D000005 6.6e-34 148.3 242 42.1
TWI56G0519 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 2.1e-32 143.3 243 41.2
Cc04_g16000 Coffea canephora HOM05D000008 ORTHO05D000005 6.2e-32 141.7 240 45.4
Cfa019027 Carpinus fangiana HOM05D000008 ORTHO05D000005 1.1e-31 141.0 237 40.5
Duzib205G1500 Durio zibethinus HOM05D000008 ORTHO05D000005 5.2e-31 138.7 259 39.8
Potri.012G072500 Populus trichocarpa HOM05D000008 ORTHO05D000005 6.8e-31 138.3 248 41.5
TAR629G0342 Trochodendron aralioides HOM05D000008 ORTHO05D000005 8.9e-31 137.9 271 38.4
Prupe.5G183500 Prunus persica HOM05D000008 ORTHO05D000005 1.2e-30 137.5 238 42.0
Ciclev10023930m.g Citrus clementina HOM05D000008 ORTHO05D000005 1.5e-30 137.1 257 39.3
Thecc.K0000400 Theobroma cacao HOM05D000008 ORTHO05D000005 2.0e-30 136.7 263 39.2
GSVIVG01008090001 Vitis vinifera HOM05D000008 ORTHO05D000005 9.9e-30 134.4 218 39.4
MD06G1184700 Malus domestica HOM05D000008 ORTHO05D000005 1.7e-29 133.7 236 41.5
Nn3g17075 Nelumbo nucifera HOM05D000008 ORTHO05D000005 1.1e-28 131.0 276 37.7
Peaxi162Scf00009g00621 Petunia axillaris HOM05D000008 ORTHO05D000005 1.1e-28 131.0 240 38.3
Atru.chr9.2359 Acer truncatum HOM05D000008 ORTHO05D000005 1.4e-28 130.6 270 38.5
Sabra12G0051700 Salix brachista HOM05D000008 ORTHO05D000005 1.4e-28 130.6 246 40.7
TWI12G0520 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 1.9e-28 130.2 238 40.3
Sopen03g032580 Solanum pennellii HOM05D000008 ORTHO05D000005 3.2e-28 129.4 232 38.8
Potri.015G067700 Populus trichocarpa HOM05D000008 ORTHO05D000005 4.2e-28 129.0 264 39.4
Nitab4.5_0000642g0100 Nicotiana tabacum HOM05D000008 ORTHO05D000005 7.1e-28 128.3 234 39.3
CAN.G999.14 Capsicum annuum HOM05D000008 ORTHO05D000005 9.2e-28 127.9 234 39.3
PGSC0003DMG400024461 Solanum tuberosum HOM05D000008 ORTHO05D000005 9.2e-28 127.9 228 39.5
Solyc03g113530.3 Solanum lycopersicum HOM05D000008 ORTHO05D000005 1.2e-27 127.5 232 38.8
Gohir.A13G086480 Gossypium hirsutum HOM05D000008 ORTHO05D000005 1.6e-27 127.1 267 39.3
CANSAT80G1731 Cannabis sativa HOM05D000008 ORTHO05D000005 3.5e-27 125.9 244 38.5
Gorai.010G139300 Gossypium raimondii HOM05D000008 ORTHO05D000005 3.5e-27 125.9 266 38.7
RcHm_v2.0_Chr7g0180151 Rosa chinensis HOM05D000008 ORTHO05D000005 4.6e-27 125.6 243 41.6
Nitab4.5_0005451g0010 Nicotiana tabacum HOM05D000008 ORTHO05D000005 6.0e-27 125.2 235 39.6
Gohir.D13G092300 Gossypium hirsutum HOM05D000008 ORTHO05D000005 7.8e-27 124.8 266 38.3
DCAR_021547 Daucus carota HOM05D000008 ORTHO05D000005 1.7e-26 123.6 235 40.9
vmacro19333 Vaccinium macrocarpon HOM05D000008 ORTHO05D000005 2.3e-26 123.2 215 38.1
MD14G1190600 Malus domestica HOM05D000008 ORTHO05D000005 3.0e-26 122.9 235 41.7
Rhsim08G0162900 Rhododendron simsii HOM05D000008 ORTHO05D000005 8.7e-26 121.3 209 41.1
ClCG06G016520 Citrullus lanatus HOM05D000008 ORTHO05D000005 1.5e-25 120.6 251 36.3
AUR62008324 Chenopodium quinoa HOM05D000008 ORTHO05D000005 5.6e-25 118.6 237 37.1
EL10Ac5g10890 Beta vulgaris HOM05D000008 ORTHO05D000005 7.3e-25 118.2 238 39.1
Eucgr.K02907 Eucalyptus grandis HOM05D000008 ORTHO05D000005 1.2e-24 117.5 219 39.7
Aqoxy3G00836 Aquilegia oxysepala HOM05D000008 ORTHO05D000005 2.1e-24 116.7 264 35.2
Phvul.009G183800 Phaseolus vulgaris HOM05D000008 ORTHO05D000005 2.1e-24 116.7 229 36.7
Sed0020624 Sechium edule HOM05D000008 ORTHO05D000005 3.6e-24 115.9 236 38.1
HanXRQChr05g0155241 Helianthus annuus HOM05D000008 ORTHO05D000005 6.2e-24 115.2 228 39.5
Sabra15G0092600 Salix brachista HOM05D000008 ORTHO05D000005 6.2e-24 115.2 261 38.3
Haze_07402 Corylus avellana HOM05D000008 ORTHO05D000005 1.8e-23 113.6 187 40.1
HanXRQChr08g0236911 Helianthus annuus HOM05D000008 ORTHO05D000005 1.8e-23 113.6 220 37.7
Ah.11g048920 Amaranthus hybridus HOM05D000008 ORTHO05D000005 2.4e-23 113.2 223 35.9
FvH4_5g15900 Fragaria vesca HOM05D000008 ORTHO05D000005 2.4e-23 113.2 240 37.9
FAN08G0503 Fragaria x ananassa HOM05D000008 ORTHO05D000005 6.9e-23 111.7 240 37.1
Manes.14G072800 Manihot esculenta HOM05D000008 ORTHO05D000005 9.0e-23 111.3 253 36.4
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.6e-22 109.8 166 44.0
Glyma.06G188400 Glycine max HOM05D000008 ORTHO05D000005 2.6e-22 109.8 224 37.1
Lj5A118T76 Lonicera japonica HOM05D000008 ORTHO05D000005 7.6e-22 108.2 210 37.1
ECA246G1536 Erigeron canadensis HOM05D002222 ORTHO05D002354 1.7e-21 107.1 222 37.4
FAN13G1047 Fragaria x ananassa HOM05D000008 ORTHO05D000005 2.9e-21 106.3 242 37.2
GSVIVG01032564001 Vitis vinifera HOM05D000008 ORTHO05D000005 6.4e-21 105.1 211 37.0
CsaV3_1G001990 Cucumis sativus L. HOM05D000008 ORTHO05D000005 1.1e-20 104.4 248 34.3
MELO3C017143.2 Cucumis melo HOM05D000008 ORTHO05D000005 3.2e-20 102.8 247 33.6
PSO161G0034 Papaver somniferum HOM05D000008 ORTHO05D000005 1.6e-19 100.5 304 31.9
arahy.Tifrunner.gnm1.ann1.7N2WU7 Arachis hypogaea HOM05D000008 ORTHO05D000005 2.7e-19 99.8 233 33.5
Migut.I00107 Erythranthe guttata HOM05D000008 ORTHO05D000005 2.7e-19 99.8 252 34.5
PSO478G1204 Papaver somniferum HOM05D000008 ORTHO05D000005 3.0e-18 96.3 305 30.8
Lsat_1_v5_gn_5_17560 Lactuca sativa HOM05D000008 ORTHO05D000005 3.9e-18 95.9 228 37.7
Sed0013371 Sechium edule HOM05D000008 ORTHO05D000005 5.1e-18 95.5 252 32.1
Thecc.04G068700 Theobroma cacao HOM05D000008 ORTHO05D000005 1.1e-17 94.4 247 30.0
Prupe.3G274800 Prunus persica HOM05D000008 ORTHO05D000005 1.5e-17 94.0 262 31.3
Lj1g0011549 Lotus japonicus HOM05D000008 ORTHO05D000005 7.3e-17 91.7 227 34.8
Cpa.g.c28309.2 Carica papaya HOM05D000008 ORTHO05D000005 1.6e-16 90.5 252 33.3
Ca_26035_v3 Cicer arietinum L. HOM05D000008 ORTHO05D000005 1.6e-16 90.5 209 35.9
arahy.Tifrunner.gnm1.ann1.45JDUT Arachis hypogaea HOM05D000008 ORTHO05D000005 6.2e-16 88.6 237 32.9
Hma1.2p1_0002F.1_g003470 Hydrangea macrophylla HOM05D000008 ORTHO05D000005 6.2e-16 88.6 61 72.1
PGR044G1094 Punica granatum HOM05D000008 ORTHO05D000005 1.4e-15 87.4 239 34.3
SGA_v2.0_scaffold25G10884 Striga asiatica HOM05D000008 ORTHO05D000005 9.0e-15 84.7 221 35.3
Medtr3g045430 Medicago truncatula HOM05D000008 ORTHO05D000005 2.9e-13 79.7 207 32.4
CiPaw.04G021100 Carya illinoinensis HOM05D000008 ORTHO05D000005 6.4e-13 78.6 254 29.5
Dinv34999 Davidia involucrata HOM05D000373 ORTHO05D001146 8.4e-13 78.2 229 32.8
QL02p079452 Quercus lobata HOM05D000008 ORTHO05D000005 8.4e-13 78.2 165 36.4
FAN04G1429 Fragaria x ananassa HOM05D000008 ORTHO05D000005 1.4e-12 77.4 78 55.1
AT1G18960 Arabidopsis thaliana HOM05D000008 ORTHO05D000005 5.4e-12 75.5 223 29.1
Actinidia36048 Actinidia chinensis HOM05D000008 ORTHO05D000005 7.1e-12 75.1 216 32.9
THA.LOC104808320 Tarenaya hassleriana HOM05D000008 ORTHO05D000005 9.3e-12 74.7 234 30.8
Sc12g0005970 Simmondsia chinensis HOM05D000008 ORTHO05D000005 1.6e-11 73.9 232 31.5
MD09G1042900 Malus domestica HOM05D000008 ORTHO05D000005 3.5e-11 72.8 225 32.4
CAN.G83.7 Capsicum annuum HOM05D000008 ORTHO05D000005 4.6e-11 72.4 219 30.6
Glyma.04G176700 Glycine max HOM05D000008 ORTHO05D000005 4.6e-11 72.4 196 33.2
Manes.15G175900 Manihot esculenta HOM05D000008 ORTHO05D000005 1.0e-10 71.2 222 27.0
Carub.0001s1859 Capsella rubella HOM05D000008 ORTHO05D000005 1.3e-10 70.9 219 30.1
DCAR_011175 Daucus carota HOM05D000008 ORTHO05D000005 3.9e-10 69.3 212 29.7
MD17G1044400 Malus domestica HOM05D000008 ORTHO05D000005 3.9e-10 69.3 242 28.5
AL1G31520 Arabidopsis lyrata HOM05D000008 ORTHO05D000005 5.1e-10 68.9 225 29.8
arahy.Tifrunner.gnm1.ann1.S1DRQT Arachis hypogaea HOM05D000008 ORTHO05D000005 6.7e-10 68.6 216 28.2
Manes.17G023900 Manihot esculenta HOM05D000008 ORTHO05D000005 6.7e-10 68.6 246 27.6
Haze_14603 Corylus avellana HOM05D000008 ORTHO05D000005 1.1e-09 67.8 255 29.4
CARHR019590 Cardamine hirsuta HOM05D000008 ORTHO05D000005 2.5e-09 66.6 219 27.9
Ciclev10013340m.g Citrus clementina HOM05D000008 ORTHO05D000005 2.5e-09 66.6 235 28.5
Thhalv10005502m.g Eutrema salsugineum HOM05D000008 ORTHO05D000005 2.5e-09 66.6 221 28.1
CDE05G3492 Ceratophyllum demersum HOM05D000008 ORTHO05D000005 3.3e-09 66.2 110 43.6
arahy.Tifrunner.gnm1.ann1.3BBB4R Arachis hypogaea HOM05D000008 ORTHO05D000005 4.3e-09 65.9 217 27.6
A08p30080 Brassica napus HOM05D000008 ORTHO05D000005 5.6e-09 65.5 221 28.1
TPR.G11119 Trifolium pratense HOM05D000008 ORTHO05D000005 5.6e-09 65.5 209 31.6
MBI04_g09743_MAGBIO Magnolia biondii HOM05D000008 ORTHO05D000005 1.3e-08 64.3 273 31.5
vmacro05777 Vaccinium macrocarpon HOM05D000008 ORTHO05D000005 1.3e-08 64.3 217 30.0
BcaC07g38969 Brassica carinata HOM05D000008 ORTHO05D000005 1.6e-08 63.9 221 29.0
C08p19080 Brassica napus HOM05D000008 ORTHO05D000005 1.6e-08 63.9 221 29.0
BolC8t49532H Brassica oleracea HOM05D000008 ORTHO05D000005 1.6e-08 63.9 221 29.0
Thhalv10008283m.g Eutrema salsugineum HOM05D000008 ORTHO05D000005 1.6e-08 63.9 223 26.5
Phvul.004G024200 Phaseolus vulgaris HOM05D000008 ORTHO05D000005 1.6e-08 63.9 222 27.0
Cc00_g19890 Coffea canephora HOM05D000008 ORTHO05D000005 2.1e-08 63.5 223 28.7
Rhsim10G0029600 Rhododendron simsii HOM05D000008 ORTHO05D000005 2.1e-08 63.5 224 29.5
BraA08t34943Z Brassica rapa HOM05D000008 ORTHO05D000005 2.8e-08 63.2 214 29.4
Psat5g184880 Pisum sativum HOM05D000008 ORTHO05D000005 2.8e-08 63.2 207 26.1
RcHm_v2.0_Chr2g0169671 Rosa chinensis HOM05D000008 ORTHO05D000005 2.8e-08 63.2 250 30.8
Glyma.13G066600 Glycine max HOM05D000008 ORTHO05D000005 3.7e-08 62.8 237 24.1
Glyma.19G017900 Glycine max HOM05D000008 ORTHO05D000005 4.8e-08 62.4 229 26.2
Sabra17G0066800 Salix brachista HOM05D000008 ORTHO05D000005 8.1e-08 61.6 201 30.8
BcaB03g12944 Brassica carinata HOM05D000008 ORTHO05D000005 1.4e-07 60.8 221 27.6
FAN02G3119 Fragaria x ananassa HOM05D000008 ORTHO05D000005 1.4e-07 60.8 233 27.9
Sp1g16920 Schrenkiella parvula HOM05D000008 ORTHO05D000005 3.1e-07 59.7 224 25.9
CSS0022389 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D000005 4.0e-07 59.3 225 28.4
Nitab4.5_0013588g0020 Nicotiana tabacum HOM05D000008 ORTHO05D000005 5.3e-07 58.9 224 28.6
PGSC0003DMG400008532 Solanum tuberosum HOM05D000008 ORTHO05D000005 5.3e-07 58.9 210 27.1
SHI25625 Sapria himalayana HOM05D000008 ORTHO05D000005 6.9e-07 58.5 213 26.3
Aa31LG7G3750 Aethionema arabicum HOM05D000008 ORTHO05D000005 1.2e-06 57.8 236 27.5
Potri.017G075000 Populus trichocarpa HOM05D000008 ORTHO05D000005 1.2e-06 57.8 95 36.8
ATR0001G044 Amborella trichopoda HOM05D000008 ORTHO05D000005 1.5e-06 57.4 236 25.4
FAN09G1672 Fragaria x ananassa HOM05D000008 ORTHO05D000005 1.5e-06 57.4 165 30.3
FAN14G5959 Fragaria x ananassa HOM05D000008 ORTHO05D000005 3.4e-06 56.2 166 29.5
FAN05G0758 Fragaria x ananassa HOM05D000008 ORTHO05D000005 4.5e-06 55.8 167 29.9
Lalb_Chr08g0236061 Lupinus albus HOM05D000008 ORTHO05D000005 4.5e-06 55.8 62 48.4
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 5.8e-06 55.5 209 28.2
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 7.6e-06 55.1 224 28.1
Carub.0005s0700 Capsella rubella HOM05D000008 ORTHO05D000005 7.6e-06 55.1 217 26.3
FvH4_6g49630 Fragaria vesca HOM05D000008 ORTHO05D000005 7.6e-06 55.1 166 29.5
VMungo0464G2108 Vigna mungo HOM05D000008 ORTHO05D000005 7.6e-06 55.1 226 27.4
ECA246G2744 Erigeron canadensis HOM05D000373 ORTHO05D001146 9.9e-06 54.7 213 26.8
unitig_61.g26482 Utricularia gibba HOM05D000008 ORTHO05D000005 9.9e-06 54.7 26 88.5


User provided reference genes

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