Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014435 Camellia sinensis var. sinensis HOM05D006983 ORTHO05D008942 8.6e-128 460.3 227 100.0
CSS0012253 Camellia sinensis var. sinensis HOM05D006983 ORTHO05D008942 4.3e-79 298.5 152 99.3
Dinv20949 Davidia involucrata HOM05D006983 ORTHO05D008942 1.5e-55 220.3 148 70.9
Dinv20994 Davidia involucrata HOM05D006983 ORTHO05D008942 1.5e-55 220.3 148 70.9
Rhsim03G0139600 Rhododendron simsii HOM05D006983 ORTHO05D008942 7.4e-55 218.0 147 70.7
vmacro07000 Vaccinium macrocarpon HOM05D006983 ORTHO05D008942 1.7e-54 216.9 149 68.5
Actinidia29673 Actinidia chinensis HOM05D006983 ORTHO05D008942 1.8e-53 213.4 151 65.6
TWI73G0069 Tripterygium wilfordii HOM05D006983 ORTHO05D008942 1.6e-49 200.3 149 64.4
Manes.10G018300 Manihot esculenta HOM05D006983 ORTHO05D008942 3.6e-49 199.1 151 61.6
TAR623G0945 Trochodendron aralioides HOM05D006983 ORTHO05D008942 5.1e-48 195.3 151 61.6
Haze_17176 Corylus avellana HOM05D006983 ORTHO05D008942 1.1e-47 194.1 150 64.0
MBI05_g03441_MAGBIO Magnolia biondii HOM05D006983 ORTHO05D008942 1.5e-47 193.7 150 61.3
Atru.chr12.252 Acer truncatum HOM05D006983 ORTHO05D008942 2.2e-46 189.9 151 58.9
Cpa.g.sc19.223 Carica papaya HOM05D006983 ORTHO05D008942 2.2e-46 189.9 137 63.5
GSVIVG01016377001 Vitis vinifera HOM05D006983 ORTHO05D008942 2.4e-45 186.4 148 61.5
Duzib114G0863 Durio zibethinus HOM05D006983 ORTHO05D008942 4.1e-45 185.7 150 60.7
CiPaw.01G295300 Carya illinoinensis HOM05D006983 ORTHO05D008942 9.1e-45 184.5 152 59.2
QL08p062549 Quercus lobata HOM05D006983 ORTHO05D008942 2.0e-44 183.3 144 61.1
Ciclev10033883m.g Citrus clementina HOM05D006983 ORTHO05D008942 3.5e-44 182.6 151 57.0
Nn2g15918 Nelumbo nucifera HOM05D006983 ORTHO05D008942 4.5e-44 182.2 158 55.1
RcHm_v2.0_Chr1g0369271 Rosa chinensis HOM05D006983 ORTHO05D008942 4.5e-44 182.2 140 62.1
Potri.010G193500 Populus trichocarpa HOM05D006983 ORTHO05D008942 1.3e-43 180.6 151 57.6
Glyma.11G226700 Glycine max HOM05D006983 ORTHO05D008942 1.7e-43 180.3 143 59.4
Lj1A949T61 Lonicera japonica HOM05D006983 ORTHO05D008942 5.0e-43 178.7 139 59.0
MD01G1146200 Malus domestica HOM05D006983 ORTHO05D008942 1.9e-42 176.8 138 60.1
Thecc.10G027200 Theobroma cacao HOM05D006983 ORTHO05D008942 1.9e-42 176.8 147 59.9
Duzib106G0752 Durio zibethinus HOM05D006983 ORTHO05D008942 2.5e-42 176.4 137 61.3
Sabra10G0149000 Salix brachista HOM05D006983 ORTHO05D008942 2.5e-42 176.4 150 56.0
Hma1.2p1_0710F.1_g207380 Hydrangea macrophylla HOM05D006983 ORTHO05D008942 3.2e-42 176.0 152 53.9
Glyma.18G030500 Glycine max HOM05D006983 ORTHO05D008942 5.5e-42 175.3 144 58.3
Glyma.02G253900 Glycine max HOM05D006983 ORTHO05D008942 7.2e-42 174.9 146 55.5
Psat5g127360 Pisum sativum HOM05D006983 ORTHO05D008942 7.2e-42 174.9 140 55.0
Ca_05926_v3 Cicer arietinum L. HOM05D006983 ORTHO05D008942 9.4e-42 174.5 150 55.3
Nitab4.5_0000278g0220 Nicotiana tabacum HOM05D006983 ORTHO05D007189 9.4e-42 174.5 139 60.4
Prupe.2G245400 Prunus persica HOM05D006983 ORTHO05D008942 2.1e-41 173.3 134 61.9
COL.COLO4_25671 Corchorus olitorius HOM05D006983 ORTHO05D008942 2.7e-41 172.9 143 60.8
FvH4_7g23940 Fragaria vesca HOM05D006983 ORTHO05D008942 2.7e-41 172.9 138 60.9
FAN01G0283 Fragaria x ananassa HOM05D006983 ORTHO05D008942 2.7e-41 172.9 138 60.9
FAN06G2291 Fragaria x ananassa HOM05D006983 ORTHO05D008942 2.7e-41 172.9 138 60.9
FAN10G1282 Fragaria x ananassa HOM05D006983 ORTHO05D008942 6.1e-41 171.8 138 61.6
TPR.G29801 Trifolium pratense HOM05D006983 ORTHO05D008942 6.1e-41 171.8 140 55.7
FAN03G3227 Fragaria x ananassa HOM05D006983 ORTHO05D008942 1.8e-40 170.2 138 60.1
Glyma.14G062600 Glycine max HOM05D006983 ORTHO05D008942 2.3e-40 169.9 146 53.4
VMungo1383G1034 Vigna mungo HOM05D006983 ORTHO05D008942 2.3e-40 169.9 140 56.4
Phvul.001G240100 Phaseolus vulgaris HOM05D006983 ORTHO05D008942 4.0e-40 169.1 140 56.4
Phvul.008G227000 Phaseolus vulgaris HOM05D006983 ORTHO05D008942 5.2e-40 168.7 146 54.1
PGR142G1076 Punica granatum HOM05D006983 ORTHO05D008942 8.8e-40 167.9 146 58.2
Cc02_g06970 Coffea canephora HOM05D006983 ORTHO05D008942 1.1e-39 167.5 139 58.3
Nitab4.5_0012179g0010 Nicotiana tabacum HOM05D006983 ORTHO05D007189 1.1e-39 167.5 142 59.2
MD07G1213100 Malus domestica HOM05D006983 ORTHO05D008942 3.3e-39 166.0 136 58.8
Psat2g036160 Pisum sativum HOM05D006983 ORTHO05D008942 3.3e-39 166.0 149 51.0
ClCG07G003900 Citrullus lanatus HOM05D006983 ORTHO05D008942 9.7e-39 164.5 138 56.5
Lalb_Chr10g0104981 Lupinus albus HOM05D006983 ORTHO05D008942 2.2e-38 163.3 139 58.3
Medtr5g081740 Medicago truncatula HOM05D006983 ORTHO05D008942 2.2e-38 163.3 135 56.3
TPR.G40054 Trifolium pratense HOM05D006983 ORTHO05D008942 2.2e-38 163.3 145 51.7
Ca_17141_v3 Cicer arietinum L. HOM05D006983 ORTHO05D008942 2.8e-38 162.9 140 54.3
Lj6g0016213 Lotus japonicus HOM05D006983 ORTHO05D008942 2.8e-38 162.9 140 53.6
arahy.Tifrunner.gnm1.ann1.6C4W0P Arachis hypogaea HOM05D006983 ORTHO05D008942 3.7e-38 162.5 147 49.0
arahy.Tifrunner.gnm1.ann1.IY3N90 Arachis hypogaea HOM05D006983 ORTHO05D008942 1.4e-37 160.6 147 49.0
arahy.Tifrunner.gnm1.ann1.A3NAV6 Arachis hypogaea HOM05D006983 ORTHO05D008942 3.1e-37 159.5 149 48.3
LjContig00357g0002291 Lotus japonicus HOM05D006983 ORTHO05D008942 4.1e-37 159.1 150 49.3
Medtr3g070090 Medicago truncatula HOM05D006983 ORTHO05D008942 5.3e-37 158.7 134 53.7
MELO3C025147.2 Cucumis melo HOM05D006983 ORTHO05D008942 7.0e-37 158.3 151 49.7
DCAR_011784 Daucus carota HOM05D003187 ORTHO05D003630 9.1e-37 157.9 165 49.7
arahy.Tifrunner.gnm1.ann1.10ZGUJ Arachis hypogaea HOM05D006983 ORTHO05D008942 2.6e-36 156.4 145 48.3
CsaV3_5G008850 Cucumis sativus L. HOM05D006983 ORTHO05D008942 3.5e-36 156.0 139 51.1
Gohir.A05G346200 Gossypium hirsutum HOM05D006983 ORTHO05D008942 4.5e-36 155.6 144 52.8
SalBow5G0486 Salvia bowleyana HOM05D006983 ORTHO05D008942 4.5e-36 155.6 144 50.0
Medtr7g092870 Medicago truncatula HOM05D006983 ORTHO05D008942 5.9e-36 155.2 129 55.0
VMungo0647G1533 Vigna mungo HOM05D006983 ORTHO05D008942 5.9e-36 155.2 147 51.7
DCAR_024839 Daucus carota HOM05D006983 ORTHO05D008942 1.7e-35 153.7 151 51.0
Lsat_1_v5_gn_2_120641 Lactuca sativa HOM05D006983 ORTHO05D008942 1.7e-35 153.7 148 52.7
Migut.F00708 Erythranthe guttata HOM05D006983 ORTHO05D008942 2.9e-35 152.9 147 50.3
Gorai.012G075200 Gossypium raimondii HOM05D006983 ORTHO05D008942 2.9e-35 152.9 144 51.4
Gohir.A10G228900 Gossypium hirsutum HOM05D006983 ORTHO05D008942 5.0e-35 152.1 138 55.8
Gohir.D10G242900 Gossypium hirsutum HOM05D006983 ORTHO05D008942 6.5e-35 151.8 138 55.8
Gorai.011G279300 Gossypium raimondii HOM05D006983 ORTHO05D008942 1.1e-34 151.0 138 55.1
AT2G39920 Arabidopsis thaliana HOM05D006983 ORTHO05D008942 1.9e-34 150.2 138 52.9
Sed0026510 Sechium edule HOM05D006983 ORTHO05D008942 2.5e-34 149.8 137 50.4
Sc10g0002160 Simmondsia chinensis HOM05D006983 ORTHO05D008942 5.5e-34 148.7 146 48.6
Gohir.D04G066400 Gossypium hirsutum HOM05D006983 ORTHO05D008942 9.4e-34 147.9 144 50.7
AL4G37500 Arabidopsis lyrata HOM05D006983 ORTHO05D008942 1.2e-33 147.5 148 49.3
HanXRQChr14g0458841 Helianthus annuus HOM05D006983 ORTHO05D008942 2.1e-33 146.7 162 46.9
Aa31LG5G19700 Aethionema arabicum HOM05D006983 ORTHO05D008942 1.4e-32 144.1 150 48.0
Thhalv10017044m.g Eutrema salsugineum HOM05D006983 ORTHO05D008942 1.8e-32 143.7 155 46.5
Carub.0004s2205 Capsella rubella HOM05D006983 ORTHO05D008942 3.0e-32 142.9 149 47.7
PSO339G3533 Papaver somniferum HOM05D006983 ORTHO05D008942 5.2e-32 142.1 139 52.5
ECA238G4046 Erigeron canadensis HOM05D006983 ORTHO05D008942 1.2e-31 141.0 152 47.4
BraA05t19618Z Brassica rapa HOM05D006983 ORTHO05D008942 1.5e-31 140.6 141 48.9
CARHR134840 Cardamine hirsuta HOM05D006983 ORTHO05D008942 1.5e-31 140.6 154 46.1
BcaC02g12125 Brassica carinata HOM05D006983 ORTHO05D008942 3.4e-31 139.4 141 48.9
C04p07590 Brassica napus HOM05D006983 ORTHO05D008942 3.4e-31 139.4 141 48.9
Eucgr.G03025 Eucalyptus grandis HOM05D006983 ORTHO05D008942 3.4e-31 139.4 140 49.3
BolC4t22375H Brassica oleracea HOM05D006983 ORTHO05D008942 9.8e-31 137.9 140 48.6
A05p06500 Brassica napus HOM05D006983 ORTHO05D008942 2.2e-30 136.7 141 48.2
PSO384G2074 Papaver somniferum HOM05D006983 ORTHO05D008942 2.2e-30 136.7 139 51.8
Sp4g22230 Schrenkiella parvula HOM05D006983 ORTHO05D008942 2.8e-30 136.3 152 45.4
BcaB02g09071 Brassica carinata HOM05D006983 ORTHO05D008942 6.3e-30 135.2 146 47.3
ECA233G0306 Erigeron canadensis HOM05D006983 ORTHO05D008942 6.3e-30 135.2 143 46.9
HanXRQChr12g0369331 Helianthus annuus HOM05D006983 ORTHO05D008942 2.4e-29 133.3 145 50.3
HanXRQChr07g0202311 Helianthus annuus HOM05D006983 ORTHO05D008942 4.1e-29 132.5 151 46.4
HPP92_015339 Vanilla planifolia HOM05D006983 ORTHO05D008942 1.2e-28 131.0 140 45.0
THA.LOC104810069 Tarenaya hassleriana HOM05D006983 ORTHO05D008942 1.0e-27 127.9 151 49.7
ATR0618G335 Amborella trichopoda HOM05D006983 ORTHO05D008942 3.8e-27 125.9 139 43.2
Nn2g13598 Nelumbo nucifera HOM05D006983 ORTHO05D008942 6.8e-24 115.2 101 47.5
Mapoly0028s0005 Marchantia polymorpha HOM05D000647 ORTHO05D000485 1.8e-13 80.5 155 34.2
Pp3c5_13290 Physcomitrium patens HOM05D000647 ORTHO05D000485 9.2e-13 78.2 151 33.8
Pp3c26_14760 Physcomitrium patens HOM05D000647 ORTHO05D000485 5.9e-12 75.5 129 32.6
Dinv20946 Davidia involucrata HOM05D006983 ORTHO05D008942 6.6e-11 72.0 56 69.6
Dinv20997 Davidia involucrata HOM05D006983 ORTHO05D008942 6.6e-11 72.0 56 69.6
Pp3c4_27860 Physcomitrium patens HOM05D000647 ORTHO05D000485 1.1e-10 71.2 129 29.5
Pp3c16_1470 Physcomitrium patens HOM05D000647 ORTHO05D000485 4.7e-09 65.9 143 30.1
BcaB06g26858 Brassica carinata HOM05D006983 ORTHO05D008942 2.6e-07 60.1 86 36.0
SMO367G0531 Selaginella moellendorffii HOM05D000647 ORTHO05D000485 4.4e-07 59.3 71 38.0
MBI02_g42753_MAGBIO Magnolia biondii HOM05D006983 ORTHO05D008942 7.5e-07 58.5 61 45.9


User provided reference genes

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