Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.0e-175 619.0 319 100.0
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.0e-171 606.7 314 99.4
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 5.4e-160 567.8 318 89.0
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 4.5e-159 564.7 318 89.6
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 4.5e-159 564.7 318 89.6
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 5.9e-159 564.3 318 89.3
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 7.7e-159 563.9 315 90.5
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.7e-158 562.8 318 88.1
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.1e-157 560.1 318 89.0
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.9e-157 559.3 318 89.0
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 4.2e-157 558.1 318 88.1
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 5.5e-157 557.8 318 88.1
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 7.2e-157 557.4 318 88.7
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.2e-156 556.6 318 87.7
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.6e-156 556.2 318 88.4
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 2.1e-156 555.8 318 88.1
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.1e-156 554.3 318 87.4
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 6.1e-156 554.3 318 87.4
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 8.0e-156 553.9 318 87.4
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.8e-155 552.7 318 87.4
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 3.0e-155 552.0 318 87.7
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 4.0e-155 551.6 318 87.4
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 1.2e-154 550.1 318 86.8
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 2.6e-154 548.9 318 88.4
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 3.4e-154 548.5 318 86.2
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.3e-153 546.6 318 86.5
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 2.8e-153 545.4 318 85.8
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 2.8e-153 545.4 318 85.8
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 2.8e-153 545.4 318 85.8
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 4.9e-153 544.7 318 84.9
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 4.9e-153 544.7 318 85.2
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.3e-153 543.9 318 85.5
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.1e-152 543.5 318 86.2
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.4e-152 543.1 318 85.5
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 1.8e-152 542.7 318 86.5
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.4e-152 542.3 318 86.2
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 3.2e-152 542.0 318 86.2
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 4.1e-152 541.6 318 85.2
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 4.1e-152 541.6 318 85.5
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 7.0e-152 540.8 318 85.5
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 7.0e-152 540.8 318 85.8
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 7.0e-152 540.8 318 84.6
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 9.2e-152 540.4 318 85.2
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 9.2e-152 540.4 318 84.6
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 9.2e-152 540.4 318 85.2
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.2e-151 540.0 318 85.2
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 1.2e-151 540.0 318 82.7
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 1.6e-151 539.7 318 85.5
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.6e-151 539.7 318 84.9
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.0e-151 539.3 318 85.5
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 3.5e-151 538.5 318 84.0
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.5e-151 538.1 318 83.6
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.9e-151 537.7 318 86.5
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 5.9e-151 537.7 318 84.6
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 5.9e-151 537.7 318 85.2
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 7.8e-151 537.3 318 83.3
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 7.8e-151 537.3 318 84.9
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 7.8e-151 537.3 318 84.6
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 1.0e-150 537.0 318 83.3
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-150 536.2 318 83.3
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.3e-150 535.8 318 83.3
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 2.3e-150 535.8 318 83.3
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 2.3e-150 535.8 318 83.3
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.3e-150 535.8 318 83.3
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 2.9e-150 535.4 318 85.8
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 3.9e-150 535.0 318 85.2
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 3.9e-150 535.0 318 83.6
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.9e-150 535.0 318 84.0
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 5.0e-150 534.6 318 83.0
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 5.0e-150 534.6 318 83.0
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 5.0e-150 534.6 318 83.0
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 6.6e-150 534.3 318 84.3
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 1.1e-149 533.5 318 82.7
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.1e-149 533.5 318 83.3
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.5e-149 533.1 318 82.7
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.5e-149 533.1 318 83.3
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.5e-149 533.1 318 84.0
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.9e-149 532.7 318 83.0
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 2.5e-149 532.3 318 82.7
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 2.5e-149 532.3 318 84.9
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 3.3e-149 531.9 318 82.7
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 4.3e-149 531.6 318 83.0
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 4.3e-149 531.6 318 83.0
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 5.6e-149 531.2 318 83.0
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 5.6e-149 531.2 318 84.3
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 5.6e-149 531.2 332 82.5
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 7.3e-149 530.8 318 82.7
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 7.3e-149 530.8 318 83.3
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 1.2e-148 530.0 318 84.0
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.6e-148 529.6 318 82.4
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.6e-148 529.6 318 82.4
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 2.8e-148 528.9 318 83.3
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 3.6e-148 528.5 318 83.3
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 6.1e-148 527.7 318 82.1
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 8.0e-148 527.3 318 82.7
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 4.0e-147 525.0 318 82.4
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 4.0e-147 525.0 318 83.0
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 6.8e-147 524.2 318 83.0
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.5e-146 523.1 318 81.8
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 4.4e-146 521.5 318 80.2
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.2e-145 519.2 318 79.9
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 8.3e-145 517.3 325 80.0
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 8.3e-145 517.3 318 80.5
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 2.4e-144 515.8 318 81.1
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 4.1e-144 515.0 318 79.2
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 9.2e-144 513.8 344 77.3
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 2.7e-143 512.3 318 82.4
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.3e-142 510.0 318 83.0
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 2.3e-142 509.2 318 80.2
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.0e-142 508.8 318 82.7
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 3.9e-142 508.4 318 78.9
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.9e-141 506.1 318 80.5
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 4.3e-141 505.0 318 81.8
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 1.6e-140 503.1 318 78.6
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 8.0e-140 500.7 312 82.4
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 6.8e-139 497.7 318 76.7
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 2.6e-138 495.7 318 80.5
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 8.3e-137 490.7 327 77.4
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 4.1e-136 488.4 292 84.2
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 6.4e-129 464.5 269 85.9
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 1.9e-125 453.0 319 71.2
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.5e-125 452.6 319 69.6
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.4e-123 446.8 319 71.5
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 7.6e-122 441.0 319 68.7
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 2.9e-121 439.1 352 65.3
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 8.4e-121 437.6 269 83.6
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.0e-118 430.6 319 67.1
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.3e-118 430.3 257 83.7
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.9e-117 426.4 257 83.3
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 4.3e-117 425.2 318 66.7
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 1.8e-115 419.9 318 67.0
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 4.4e-114 415.2 258 80.2
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 3.5e-111 405.6 364 63.7
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 3.6e-108 395.6 319 64.6
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 5.7e-93 345.1 201 86.1
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.3e-92 344.0 202 86.6
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.6e-87 325.5 274 65.3
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 9.1e-75 284.6 324 47.8
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 3.4e-74 282.7 182 78.6
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 3.8e-73 279.3 218 69.7
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 8.0e-55 218.4 208 61.5
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.7e-49 200.7 118 81.4
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 1.3e-44 184.5 273 43.6
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 1.8e-43 180.6 188 55.9
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 3.7e-36 156.4 154 59.1
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 3.9e-33 146.4 179 47.5
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 2.2e-28 130.6 133 59.4
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 6.2e-23 112.5 74 71.6
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 8.1e-23 112.1 67 80.6
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 4.0e-22 109.8 125 52.0
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 3.4e-21 106.7 61 82.0
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 6.4e-20 102.4 75 69.3
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 5.4e-19 99.4 62 75.8
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.5e-16 91.3 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.8e-15 87.0 66 68.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 3.1e-14 83.6 208 33.2
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.9e-12 77.0 48 79.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.9e-11 74.3 69 60.9
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 5.4e-11 72.8 46 73.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 3.5e-10 70.1 72 61.1
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 1.3e-09 68.2 64 57.8
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.3e-09 68.2 42 76.2
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 2.3e-09 67.4 37 89.2
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 5.1e-09 66.2 42 76.2
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 5.1e-09 66.2 55 69.1
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 8.6e-09 65.5 42 73.8
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 3.3e-08 63.5 58 60.3
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 4.0e-06 56.6 34 76.5
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 4.0e-06 56.6 31 80.6
arahy.Tifrunner.gnm1.ann1.G95B1D Arachis hypogaea HOM05D004109 ORTHO05D084004 8.9e-06 55.5 38 68.4


User provided reference genes

Program Settings