Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0014430 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-71 271.9 136 100.0
CSS0049708 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.9e-38 162.2 121 70.2
CSS0021158 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-31 139.4 85 81.2
Lju225C4G4 Lonicera japonica HOM05D000002 ORTHO05D000001 8.4e-30 134.0 110 57.3
Lju225C0G8 Lonicera japonica HOM05D000002 ORTHO05D000001 7.1e-29 131.0 110 55.5
Rhsim09G0019300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.6e-28 129.8 124 50.8
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.6e-28 128.3 133 51.1
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.3e-25 120.2 126 50.8
CSS0016107 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-24 117.1 123 47.2
Rhsim02G0101600 Rhododendron simsii HOM05D000002 ORTHO05D000001 9.0e-24 114.0 134 44.8
CSS0046748 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.0e-23 112.8 133 42.9
CSS0025416 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-23 112.1 123 46.3
CSS0003386 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.6e-20 102.1 108 46.3
Rhsim06G0125700 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.4e-16 89.4 107 43.0
CSS0007773 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.9e-16 87.8 118 40.7
MSTRG.19383 Avicennia marina HOM05D000073 ORTHO05D000033 8.5e-14 80.9 92 44.6
CSS0034941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-13 79.3 81 45.7
CSS0045870 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-13 79.0 81 44.4
CAN.G447.8 Capsicum annuum HOM05D000002 ORTHO05D000001 3.2e-13 79.0 87 44.8
CSS0029429 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-12 76.3 129 36.4
CSS0039702 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-11 73.2 99 41.4
CSS0043017 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.7e-11 71.2 84 42.9
SGA_v2.0_scaffold31G12742 Striga asiatica HOM05D000073 ORTHO05D000033 1.1e-10 70.5 69 46.4
Atru.chr2.3010 Acer truncatum HOM05D000002 ORTHO05D000001 9.7e-10 67.4 105 32.4
CSS0050038 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.7e-10 67.4 106 35.8
Atru.chr13.248 Acer truncatum HOM05D000002 ORTHO05D000001 2.2e-09 66.2 105 32.4
Prupe.4G199600 Prunus persica HOM05D000002 ORTHO05D000001 4.8e-09 65.1 108 33.3
Lj2P1186T25 Lonicera japonica HOM05D000002 ORTHO05D000001 6.3e-09 64.7 55 52.7
QL08p052300 Quercus lobata HOM05D000002 ORTHO05D000001 8.2e-09 64.3 107 34.6
Lj2g0024035 Lotus japonicus HOM05D000002 ORTHO05D000001 9.1e-08 60.8 129 33.3
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 3.4e-07 58.9 126 30.2
Sopen12g023510 Solanum pennellii HOM05D000002 ORTHO05D000001 3.4e-07 58.9 122 28.7
Migut.F01590 Erythranthe guttata HOM05D000002 ORTHO05D000001 4.5e-07 58.5 103 31.1
Migut.H01198 Erythranthe guttata HOM05D000002 ORTHO05D000001 4.5e-07 58.5 103 31.1
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 5.9e-07 58.2 105 31.4
Sopen11g003490 Solanum pennellii HOM05D000002 ORTHO05D000001 5.9e-07 58.2 95 29.5
Sopen11g022270 Solanum pennellii HOM05D000002 ORTHO05D000001 5.9e-07 58.2 95 29.5
Cpa.g.sc188.27 Carica papaya HOM05D058748 ORTHO05D000001 7.7e-07 57.8 109 33.0
COL.COLO4_22605 Corchorus olitorius HOM05D014020 ORTHO05D000001 7.7e-07 57.8 96 32.3
Nitab4.5_0000164g0090 Nicotiana tabacum HOM05D002833 ORTHO05D003210 1.0e-06 57.4 116 29.3
Sopen04g008990 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-06 57.0 95 29.5
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 2.2e-06 56.2 130 29.2
PSO541G1536 Papaver somniferum HOM05D000002 ORTHO05D000001 2.9e-06 55.8 119 26.9
Peaxi162Scf00031g00297 Petunia axillaris HOM05D010760 ORTHO05D003210 2.9e-06 55.8 124 26.6
Sopen05g011750 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-06 55.8 122 27.0
RcHm_v2.0_Chr7g0200091 Rosa chinensis HOM05D000002 ORTHO05D000001 5.0e-06 55.1 102 35.3
TAR301G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.0e-06 55.1 129 28.7
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 6.5e-06 54.7 118 29.7


User provided reference genes

Program Settings